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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATCGTCGCGCTCGGCCCCATCCAGTGCGGCTTCACAAGCGGCTACTCCTCGCCGACGCAGGACGGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgtacctcctggctgcagtttctacgtcctaacgctagctttgtcttcacgctcggctcggcgcgttcgtctcaaaatcaaacgaacaaataattgatggagctccgtcgcctccccag

Basic information

species Zea mays
transcript GRMZM2G077546_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G077546_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49260.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTGCGGCTTCACAAGCGGCTACTCCTCGCCGACGCAGGACGGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgtacctcctggctgcagtttctacgtcctaacgctagctttgtcttcacgctcggctcggcgcgttcgtctcaaaatcaaacgaacaaataattgatggagctccgtcgcctccccag
|||||||||||||||||||||||| | ||| ||||| ||||||| |||||| || || ||||||| ||||||||| |||||||| |||||||||||||||||  | | || | |      || ||  ||  || |   ||||      |     |||    |||||  |   |   | ||      |  |   ||||| ||                 
CATCGTCGCGCTCGGCCCCATCCAATTCGGATTCACCAGCGGCTTCTCCTCACCCACCCAGGACGCCATCATCCGCGACCTCAAGCTCTCCATCTCCGAGgt--cccgtgcccgttccagctgcgatcttgcg-tgcttttgctgcttcctcttgcttattgcgtttcttgtagtgtgaagttt-tatctttctgatgcag-----------------

upper sequence: GRMZM2G077546_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g49270.1 (Oryza sativa), 5'ss of exon 1
CATCGTCGCGCTCGGCCCCATCCAGTGCGGCTTCACAAGCGGCTACTCCTCGCCGACGCAGGACGGCATCATCCGGGACCTCAACCTCTCCATCTCCGAGgtacctcctggctgcagtttctacgtcctaacgctagctttgtcttcacgctcggctcggcgcgttcgtctcaaaatcaaacgaacaaataattgatggagctccgtcgcctccccag
|||||||||||||||||||||||||| ||| |||||  | |||| |||||| ||||||||||||| ||||||||| |||||| ||||| || ||||||||||  || |  ||| |   |||| | || |  || |   |     | | | | |  | |      || ||| | ||    ||||| |       || || ||                 
CATCGTCGCGCTCGGCCCCATCCAGTTCGGATTCACGGGGGGCTTCTCCTCCCCGACGCAGGACGCCATCATCCGAGACCTCGACCTCACCCTCTCCGAGgttgctgcccgcttcttcttcttcttctt--cggttcttcccattacccccccccccctttttttttgtcccgaatctgaacga-cgcgctgctgctgcag-----------------