Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctaccagaccatgtcgtagcccctagttactactgcttgattattacttttcgcttttcttgggagtaaaattttatttactcgccgttttgggc...

Basic information

species Zea mays
transcript GRMZM2G077233_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211068180|gb|FL270393.1|FL270393
EST:     TTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAGGTAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
genomic: TTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCA-GG--GCA-G-AAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
EST: gi|211065424|gb|FL270388.1|FL270388
EST:     TTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAGTTTAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
genomic: TTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
EST: gi|211006260|gb|FL408530.1|FL408530
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211021985|gb|FL373963.1|FL373963
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211035298|gb|FL425640.1|FL425640
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTNTTATCTGGGTCCTGTCA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTT-TCTGGGTCCTGTCA
EST: gi|211169684|gb|FL404316.1|FL404316
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211429217|gb|FL412881.1|FL412881
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211068177|gb|FL270390.1|FL270390
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211490935|gb|FL402015.1|FL402015
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211065425|gb|FL270389.1|FL270389
EST:     TTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAGTTTAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
genomic: TTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
EST: gi|211408348|gb|FL400112.1|FL400112
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|33095426|gb|CF055420.1|CF055420
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211092306|gb|FL381164.1|FL381164
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|67034446|gb|CO462996.1|CO462996
EST:     CGGAAGCTCTGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211099804|gb|FL386854.1|FL386854
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211284111|gb|FL384410.1|FL384410
EST:     CCAGCTTTCCCCTTCTCTCCGGTCHGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211307069|gb|FL384798.1|FL384798
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211541914|gb|FL379334.1|FL379334
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|91876413|gb|EB406370.1|EB406370
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|60357617|gb|DN224590.1|DN224590
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211526836|gb|FL377024.1|FL377024
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|76291015|gb|DV030583.1|DV030583
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211068182|gb|FL270395.1|FL270395
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211065421|gb|FL270385.1|FL270385
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211282292|gb|FL384388.1|FL384388
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211256572|gb|FL391902.1|FL391902
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211068181|gb|FL270394.1|FL270394
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211206833|gb|FL384246.1|FL384246
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211068184|gb|FL270397.1|FL270397
EST:     TTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAGGTAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
genomic: TTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCA-GG--GCA-G-AAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
EST: gi|211065420|gb|FL270384.1|FL270384
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211010988|gb|FL371775.1|FL371775
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211504863|gb|FL422036.1|FL422036
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211469234|gb|FL410782.1|FL410782
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|32848977|gb|CD988658.1|CD988658
EST:     CTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211534114|gb|FL426916.1|FL426916
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|76289740|gb|DV029308.1|DV029308
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211373714|gb|FL377783.1|FL377783
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211276938|gb|FL386932.1|FL386932
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211488507|gb|FL422898.1|FL422898
EST:     CCAGCTTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211063112|gb|FL397366.1|FL397366
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGTTTAG                     
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAG-A----AGgtaagctacc ... gctagt
EST: gi|211358134|gb|FL398765.1|FL398765
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAKACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211065423|gb|FL270387.1|FL270387
EST:     TTTCCCCTTCTCTACGGTCCGGGAATCGGAAGCTCACGGCAGAAGGTAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
genomic: TTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCA-GG--GCA-G-AAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCA
EST: gi|78179156|gb|DV549529.1|DV549529
EST:     GTCCGGGAATCGGAAGCTCACGGCAGAAG                         CCATGAGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: GTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211501660|gb|FL380192.1|FL380192
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
EST: gi|211448105|gb|FL406311.1|FL406311
EST:     CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAG                         CCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA
genomic: CCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctacc ... gctagtttagCCATGGGGCAGACGCATCTTTTGTTGCTCGCTTGTTTCTGGGTCCTGTCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGTGGTCTATTTGTCTCCCAGTCCCACTCCGTCCACTCGAGCTCTCCACCAGCTTTCCCCTTCTCTCCGGTCCGGGAATCGGAAGCTCAGGGCAGAAGgtaagctaccagaccatgtcgtagcccctagttactactgcttgattattacttttcgcttttcttgggagtaaaattttatttactcgccgttttgggc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA