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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCATCGTCGTCACCCCCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCTGAGGgtaactagtgtttgtttgtttgtttactacggatcggaagcaaagcaagcaagcgaaacgggattttgatcttgctgctgcaaaatgagcag

Basic information

species Zea mays
transcript GRMZM2G076723_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G076723_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g36480.1 (Oryza sativa), 5'ss of exon 1
CGCATCGTCGTCACCCCCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCTGAGGgtaac-----tagtgtttgtt--tgtttgtttactacggatcgga--agcaaagcaagcaagcgaaacgggattttgatcttgctgctgcaaaatgagcag-------
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| || ||||||     ||   ||  ||  ||  ||| ||  ||  ||   |      | || |  | |        || ||   |  ||   |     ||  |           
CGCATCATCGTCACCACCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTCCCGTCCCATGTCGACGCCGAGCTCGCCAACGCCGATGgtaacgtatttaccattcattcatgcatgtgtaaaacacattttaccgttcatgcgaatatgtatgtactgagttgagttctgactcgatcgaacaaatgctcatcag

upper sequence: GRMZM2G076723_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g36500.1 (Oryza sativa), 5'ss of exon 1
CGCATCGTCGTCACCCCCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCTGAGGgtaactagtgtttgtt-----tgtttgtttactacggatcggaagcaaagcaagcaagcgaaacgggattttgatcttgctgctgcaaaa--tgagcag
|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||||||| || ||||||   | |||        ||  ||  ||  ||  ||   |  |    |  || |        | ||  ||| || | |    ||||   | | |||
CGCATCATCGTCACCACCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCTTCCCGTCCCATGTCGACGCCGAGCTCGCCAACGCCGATGgtaacgtatatttaccatgcgtgcatgcgtaaaacacatttta--ccgttcttgcgaatatgtatgtatactga-ctcgatcgaacaaatgctcatcag

upper sequence: GRMZM2G076723_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv18s0001g03910.t01 (Vitis vinifera), 5'ss of exon 1
CGCATCGTCGTCACCCCCGCCGAGTCCGACAACTACTACCATTACAAGGACAACCGCGTCCTGCCGTCGCACGTCGACGCCGAGCTCGCCAACGCTGAGGgtaactagtgtttgtttgtttgtttactacggatcggaagcaaagcaagcaagcgaaacgggattttgatcttgctgctgcaaaatgagcag----------------------------------------
|| ||| |||| ||| ||   || || ||||  || |||||||||||||||||| | ||||| || || ||||||||||||||||| || ||||| || ||||    | |                |  |  ||    ||  |    |        |    | ||||| | ||     ||    | ||  ||                                        
CGAATCATCGTAACCACCCAAGAATCTGACAGTTATTACCATTACAAGGACAACAGAGTCCTCCCTTCACACGTCGACGCCGAGCTAGCAAACGCCGAAGgtacactgcgccccacatccccccacccccctattaatag--acatgactctctatattttgtttttggttttataaatgggcgaagatgaggatctgaggtaatgttactattttggttgacatggagcag