1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGCTATCCCTGCTGGAGTACCCGCGGGCGAACGCCCCCGCGCAATCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGgtacgcgccgcatttcctttcctctccgcttctcctgctttctgggagctgtgatctctctgctgggtttggccttcgattttgggattcgggctaggaactgacggtctgctcgtttggtgtgtgcgcgttccggag
species | Zea mays |
transcript | GRMZM2G075101_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCG GCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAGEST: gi|89756318|gb|DY686383.1|DY686383
genomic: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGgtacgcgccg ... cgttccggagGCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAG
EST: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCG GCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAGEST: gi|93012885|gb|EB638405.1|EB638405
genomic: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGgtacgcgccg ... cgttccggagGCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAG
EST: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCG GCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAG
genomic: CTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGgtacgcgccg ... cgttccggagGCTCCTAGGCGACAGATCGCCCTTCACGCAGCAGAACTGGCAAGGGGATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTATCCCTGCTGGAGTACCCGCGGGCGAACGCCCCCGCGCAATCCCTCCTCTTCGCCGGCGTCGAGCGCTACCGCCTCCTCGAGTGGCTCTTCTTCCGgtacgcgccgcatttcctttcctctccgcttctcctgctttctgggagctgtgatctctctgctgggtttggccttcgattttgggattcgggctaggaactgacggtctgctcgtttggtgtgtgcgcgttccggag
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