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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaaccgtcgaaattttcttcacttcgtttctgcctttgaccagctcttgcgctcggcttatctcgtgcggttgttgctagaaccgtccctaatt...

Basic information

species Zea mays
transcript GRMZM2G074898_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211481788|gb|FL382325.1|FL382325
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211346388|gb|FL410657.1|FL410657
EST:     CTACGGCCGCCACCATCGCCTCTCTGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CTACGGCCGCCACCATCGCCTCGC-GGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60340680|gb|DN207653.1|DN207653
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|17970253|gb|BM277016.1|BM277016
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211343699|gb|FL394269.1|FL394269
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|40334938|gb|CK369008.1|CK369008
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTACTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211455841|gb|FL371243.1|FL371243
EST:     TCTACGGCCGCCACCATCGCCTCGSGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60357584|gb|DN224557.1|DN224557
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32912748|gb|CF017560.1|CF017560
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32912550|gb|CF017362.1|CF017362
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211518470|gb|FL391754.1|FL391754
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211081823|gb|FL380750.1|FL380750
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211275568|gb|FL307670.1|FL307670
EST:     GCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTTAA
genomic: GCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|5439460|gb|AI820381.1|AI820381
EST:     GCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: GCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211151698|gb|FL395044.1|FL395044
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211057427|gb|FL405183.1|FL405183
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|33466891|gb|CF243940.1|CF243940
EST:     TGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32916299|gb|CF021111.1|CF021111
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211423511|gb|FL387507.1|FL387507
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCYTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32857944|gb|CD997625.1|CD997625
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGA-TTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60400075|gb|DN232882.1|DN232882
EST:     CGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|61117725|gb|DN558686.1|DN558686
EST:     CATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: CATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60338406|gb|DN205379.1|DN205379
EST:     CCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32916287|gb|CF021099.1|CF021099
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211205227|gb|FL427932.1|FL427932
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCKGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211397511|gb|FL028518.1|FL028518
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60346777|gb|DN213750.1|DN213750
EST:     CCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211349078|gb|FL422792.1|FL422792
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|27575952|gb|CA998646.1|CA998646
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|9255288|gb|BE345756.1|BE345756
EST:     CACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         -TTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60340046|gb|DN207019.1|DN207019
EST:     GCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: GCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211533526|gb|FL409955.1|FL409955
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60358293|gb|DN225266.1|DN225266
EST:     CACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGANNNNNNNGAAGCCGAGAAGATGGTGCTGAA
genomic: CACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGA-TTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60339236|gb|DN206209.1|DN206209
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211539244|gb|FL396305.1|FL396305
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211501617|gb|FL378298.1|FL378298
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|61117724|gb|DN558685.1|DN558685
EST:     GCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: GCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32907841|gb|CF012654.1|CF012654
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32858207|gb|CD997888.1|CD997888
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|26557169|gb|CA829404.1|CA829404
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211449456|gb|FL371664.1|FL371664
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32907015|gb|CF011828.1|CF011828
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211202123|gb|FL177996.1|FL177996
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|30306809|gb|CD001482.1|CD001482
EST:     TCTACGGCCGCCACCATCGCCTCGCGG-CGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|86856126|gb|DY307137.1|DY307137
EST:     CGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: CGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32912214|gb|CF017026.1|CF017026
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60344841|gb|DN211814.1|DN211814
EST:     GCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: GCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|22546116|gb|BU098437.1|BU098437
EST:     CTACGGCCGCCACCATCCTCTTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CTACGGCCGCCACCAT-CGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211156590|gb|FL395424.1|FL395424
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32916277|gb|CF021089.1|CF021089
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|19351218|gb|BM895750.1|BM895750
EST:     TCTACGGCCGCCACCATCGCCTCG-GGCCGCCTGCCGCTCCGCTCG-AAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|22489414|gb|BU049337.1|BU049337
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60401467|gb|DN234274.1|DN234274
EST:     GCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: GCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211157838|gb|FL370476.1|FL370476
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211202120|gb|FL177993.1|FL177993
EST:     TCTACGGCCGCCACCATCGCCTCGNGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|19350583|gb|BM895115.1|BM895115
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211520879|gb|FL379231.1|FL379231
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|9255420|gb|BE345888.1|BE345888
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211415704|gb|FL382754.1|FL382754
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|113702770|gb|EE680274.1|EE680274
EST:     CTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211429599|gb|FL427249.1|FL427249
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|61117723|gb|DN558684.1|DN558684
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32863688|gb|CF003370.1|CF003370
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60346696|gb|DN213669.1|DN213669
EST:     CCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|28931314|gb|CB334675.1|CB334675
EST:     CTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|88758546|gb|DY542915.1|DY542915
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|29946890|gb|CB816375.1|CB816375
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAG-GAAGATTTTTTGAAGCCGAGAAGATGG-GCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|30088005|gb|CB886210.1|CB886210
EST:     CCACCATCGCCTCGCGG-CGCCTGCCGCTCCGCTCGAAAG                         -TTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGG-GCTGAA
genomic: CCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32909393|gb|CF014205.1|CF014205
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|33091237|gb|CF051231.1|CF051231
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|5018398|gb|AI714591.1|AI714591
EST:     CCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32912830|gb|CF017642.1|CF017642
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|60394206|gb|DN227076.1|DN227076
EST:     CGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|32908151|gb|CF012964.1|CF012964
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|86470312|gb|DY236682.1|DY236682
EST:     CTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|120480973|gb|EH211102.1|EH211102
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211103186|gb|FL427059.1|FL427059
EST:     TCTACCGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGGAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211085458|gb|FL413527.1|FL413527
EST:     CTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCTCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: CTACGGCCGCCACCATCGCCTCGCGGCCGCCTGC-CGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|20300626|gb|BQ163569.1|BQ163569
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211379540|gb|FL395178.1|FL395178
EST:     TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAG                         TTTTTGGTGAAGATTTTTTGAAGCTGAGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|211408570|gb|FL414978.1|FL414978
EST:     TCTACGGCCGCCACCATCGCCTCGCGACCGCTTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGRGAAGATGGTGCTGAA
genomic: TCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|9028630|gb|BE238670.1|BE238670
EST:     GCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: GCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
EST: gi|113703310|gb|EE680814.1|EE680814
EST:     CGCCACCATCGCCTCGCGACCGCCTGCCGCTCCGCTCGAAAG                         TTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA
genomic: CGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 3912

CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 3101

CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 1698

CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA


Block sizes: 49 (upstream exon), 42 (downstream exon)
Score: 2939

CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaac ... aattacacagTTTTTAGTGAAGATTTTTTGAAGCCGAGAAGATGGTGCTGAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCCATATAAGAAACCCTAGCGGAGCCACCAGCACACTCGTCTTTTTCCTCTACGGCCGCCACCATCGCCTCGCGGCCGCCTGCCGCTCCGCTCGAAAGgtgtggcaaccgtcgaaattttcttcacttcgtttctgcctttgaccagctcttgcgctcggcttatctcgtgcggttgttgctagaaccgtccctaatt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccc