ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

CTAACTCCGGTGGCTCCACCACTAGCAACCCGTGCAGCGAGCCCACCCCGACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccctgcggccttcccacctcgcctgctggccgtatcctatgtgttctctaacgagggtctgtttggtcctgcag

Basic information

species	Zea mays
transcript	GRMZM2G074386_T06
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G074386_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g32800.2 (Oryza sativa), 5'ss of exon 1

CTAACTCCGGTGGCTCCACCA--CTAGCAACCCGTGCAGCGAGCCCA---CCCCGACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccctgcggccttcccacctcgcctgctggccgtatcctatgtgttctctaacgagggtct--gtttggtcctgcag---------------
       | |   | | | ||  | |||  ||   || |    || |   |||||| | | |||||||||||||||||||||||||||||||||||||||||||||||  | |||     |  ||||  | |||| || |    |  |    |   || || |||| || |   | ||| |  ||  |               
-----CGCCGCATCCCGAGCAAGCAAGCCGCCGCCGCCGACGACCTAGCTCCCCGATCGCGGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtaagcccccatactcgatccccgcccgcc-gccgtggtttcctccggctctcgctgacgacggccgcgggttgttgttggtgtgtgtgtgcctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211293899|gb|FL244459.1|FL244459

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211423761|gb|FL057574.1|FL057574

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211304832|gb|FL260605.1|FL260605

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211293903|gb|FL244463.1|FL244463

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GA-C--CGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151431|gb|FL260598.1|FL260598

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211304831|gb|FL260604.1|FL260604

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211399896|gb|FL244532.1|FL244532

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211300322|gb|FL244507.1|FL244507

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211149988|gb|FL260580.1|FL260580

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211144973|gb|FL424892.1|FL424892

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151434|gb|FL260601.1|FL260601

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACYGTGTCGTCGCGGCGGANAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211302466|gb|FL244528.1|FL244528

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGA                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151420|gb|FL260587.1|FL260587

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151421|gb|FL260588.1|FL260588

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211289625|gb|FL244438.1|FL244438

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211293906|gb|FL244466.1|FL244466

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211302460|gb|FL244522.1|FL244522

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTWCTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151427|gb|FL260594.1|FL260594

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211149990|gb|FL260582.1|FL260582

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211149983|gb|FL260575.1|FL260575

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151422|gb|FL260589.1|FL260589

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211300327|gb|FL244512.1|FL244512

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211151429|gb|FL260596.1|FL260596

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGKYGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|116819555|gb|EC862690.1|EC862690

EST:     CCACTGCCATGTCGAAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTTGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: CCACTGCCATGTCG-AGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|32910464|gb|CF015276.1|CF015276

EST:     ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

EST: gi|211149994|gb|FL260586.1|FL260586

EST:     ACCACTGCCATGTCGA-GCGCGGCGACTGGGTCTACGAGAACAACGGCGG                         GACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC
genomic: ACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACAC

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 158

CTAACTCCGGTGGCTCCACCACTAGCAACCCGTGCAGCGAGCCCACCCCGACCACTGCCATGTCGAGGCGCGGCGACTGGGTCTACGAGAACAACGGCGGgtagcctccc ... ggtcctgcagGACCTGCGTGGCCATCGCCGGCGCCGATTACTGTGTCGTCGCGGCGGACACCCGCCTCTCTGTCGGATACAGCATCCTCACGCGCGACCACTCTAAGATC

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 69

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 44