Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAAACCGTAGCGCCCTCGCCTGCTCGCCGCCGCCGTCGTTGCGAGCTCCCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtag

Basic information

species Zea mays
transcript GRMZM2G074300_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074300_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g38000.1 (Oryza sativa), 5'ss of exon 1
CCAAAACCGTAGC-GCCCTCGCCTGCTCGCCGCCGCCGTCGTTGCGAGCTCCCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtag
 |    |||   | |||  ||||| |||| ||  || |         |||||   || ||| ||  || ||||||||||||||||||||||||||||||||||||| | ||   |||    || || | |  |    |   ||    |        | |||||||   ||  |  |    ||||
-CGCCGCCGCCTCCGCCTCCGCCTCCTCGTCGGAGCAGCGAGCCGCTGCTCCTTCTCCTCCACCACCAGCCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacg-gtgcagatccct--cgcagggtt-tcgattcgattcgattcgattctcctcgatctgatg-gtttttgttcatgtag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211516716|gb|FL197113.1|FL197113
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504917|gb|FL197047.1|FL197047
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTATTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211264435|gb|FL070938.1|FL070938
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|22546268|gb|BU098579.1|BU098579
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|26457601|gb|CA829184.1|CA829184
EST:     CCAGATCAGC-AGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507270|gb|FL197054.1|FL197054
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|148933725|gb|EC877641.2|EC877641
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|18661874|gb|BM501626.1|BM501626
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCG-CAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211374869|gb|FL197001.1|FL197001
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|9254109|gb|BE344577.1|BE344577
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|27522126|gb|CA989232.1|CA989232
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514357|gb|FL197096.1|FL197096
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|149078913|gb|EE167734.2|EE167734
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211512006|gb|FL197086.1|FL197086
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|9254179|gb|BE344647.1|BE344647
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|29576818|gb|CB616930.1|CB616930
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507278|gb|FL197062.1|FL197062
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504910|gb|FL197040.1|FL197040
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|32864638|gb|CF004320.1|CF004320
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|76284526|gb|DV024094.1|DV024094
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211098262|gb|FL316231.1|FL316231
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGC-GAGGCTCAATGAGATGCTGACGCG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAG-CTCAATGAGATGCTGACGCG
EST: gi|211507269|gb|FL197053.1|FL197053
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211012588|gb|FL327135.1|FL327135
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|15053894|gb|BI359439.1|BI359439
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|22546706|gb|BU099017.1|BU099017
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514358|gb|FL197097.1|FL197097
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGC-GAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|148991020|gb|EE032461.2|EE032461
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|21626375|gb|BQ621296.1|BQ621296
EST:     AGAAGAAGAAG                         TATCGTCAGCGACGGCGTGTTCTACGTCCGAGCTCAATGAGATGCTGACGC
genomic: AGAAGAAGAAGgtacgcgagc ... ttgtccgtagT-TCGTCAGCGACGGCGTGTTCTACG-CCGAGCTCAATGAGATGCTGACGC
EST: gi|211369553|gb|FL196974.1|FL196974
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372204|gb|FL196985.1|FL196985
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|29947264|gb|CB816565.1|CB816565
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|6918465|gb|AW399995.1|AW399995
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372197|gb|FL196978.1|FL196978
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502560|gb|FL197032.1|FL197032
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211374868|gb|FL197000.1|FL197000
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|94479335|gb|EB708293.1|EB708293
EST:     CCATCTTCCTCCGTCAACCATGGCGACCCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACCGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCG
genomic: CCATCTTCCTCCGTCAACCATGGCGACCC-AGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGAC-GGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCG
EST: gi|148956519|gb|EC902358.2|EC902358
EST:     CCCATCTTCCTCCGTCTACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGGGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|22545535|gb|BU097894.1|BU097894
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211504914|gb|FL197044.1|FL197044
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211514361|gb|FL197100.1|FL197100
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211512000|gb|FL197080.1|FL197080
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507277|gb|FL197061.1|FL197061
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372200|gb|FL196981.1|FL196981
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372194|gb|FL196975.1|FL196975
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|78111606|gb|DV530003.1|DV530003
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|84351642|gb|DW246047.1|DW246047
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372206|gb|FL196987.1|FL196987
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|9952937|gb|BE639520.1|BE639520
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|91057136|gb|EB167554.1|EB167554
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211372195|gb|FL196976.1|FL196976
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCS-AGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|18654852|gb|BM499657.1|BM499657
EST:     CTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|89248143|gb|DY619929.1|DY619929
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|9254139|gb|BE344607.1|BE344607
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|5398800|gb|AI812144.1|AI812144
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211507274|gb|FL197058.1|FL197058
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211031757|gb|FL369434.1|FL369434
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211377526|gb|FL197016.1|FL197016
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|28930830|gb|CB334191.1|CB334191
EST:     CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
EST: gi|211502555|gb|FL197027.1|FL197027
EST:     CCCATCTTCCTCCGTTAACCATGGCGACCCAGATCAGCAAGAAGAAGAAG                         TTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG
genomic: CCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagc ... ttgtccgtagTTCGTCAGCGACGGCGTGTTCTACGCCGAGCTCAATGAGATGCTGACGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAAACCGTAGCGCCCTCGCCTGCTCGCCGCCGCCGTCGTTGCGAGCTCCCCATCTTCCTCCGTCAACCATGGCGACCCAGATCAGCAAGAAGAAGAAGgtacgcgagctcctcctaaacgtagcgctaccagcccttctcccccctgcgtcgatggatctgacctgtgctcttgtccgtag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG