Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag

Basic information

species Zea mays
transcript GRMZM2G074097_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g34570.1 (Oryza sativa), 5'ss of exon 1
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag
| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||  | ||  ||      || ||| | | ||        || | || ||||  | | ||  ||  || |||| | |      | |  | | || |||                                                      
CACCGCCGAGGACGAGATCGTCCGCCTCACCCGCGAGGTCGTCCCCGGCATGATCGTCACCGGCATGGAGGTCGCCGAGATCGACGGCGCCCCGAGAATGgtacg-caccaa-----aaaaacatcaaact--------cttcaccataatctctcccccgttc-ttggatttgaa------caaattcgttgttgcag----------------------------------------------------

upper sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G39740.1 (Glycine max), 5'ss of exon 1
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag
 || || ||||| |  || ||| | |||||| | ||| | |||||||||||||| |||||||| |||||||| || || || || ||| |||| ||||||||  |   ||               |||      |  || | ||  ||| ||    |   |||  | | |||   ||||    |  |||  |    |   |  | ||| ||    |   ||||  ||   |                    
TGCTGCAGAGGATGCTATTGTGAGGCTCACGAGGGAGATTGTGCCCGGCATGATTGTCACCGGCATGGAGGTGGCAGAAATTGATGGCTCCCCAAGGATGgtatgcagttt--------------ctattctaatcttggtcctaattacttaagtat--attattattattcacaagat--ttgtctacataaaac--attttcaataatattgttggtgatatatgcag--------------------

upper sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
lower sequence: Vv19s0177g00140.t01 (Vitis vinifera), 5'ss of exon 1
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag
| | || ||||| ||||||||| | |||||  | ||||| ||||| || |||||||||||||| ||||| || || ||||| || ||| |||| |||||||| | |   |  ||           ||  |||  || |  || | |||  |||      ||   |  |  || |||  | || |   ||| |     || |    ||||   |||                                    
CACGGCAGAGGATGAGATCGTGAGGCTCACCAGGGAGGTGGTGCCGGGAATGATCGTCACCGGAATGGAAGTTGCAGAGATTGATGGCTCCCCAAGGATGgtaattttcttcttt----------ctcactacttgtttttagtacttt-ttgtttcttgaaaaaaattgtttggacaaaagatcattagata----tatttgaaaatttaaaat------------------------------------

upper sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ04508 (Selaginella moellendorffii), 5'ss of exon 1
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag
| | |||||||||| ||||||| | ||||| |||||||| || || || ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| |     |  |||           |   |   || || | |  |||||     | | | |  |                                                                                      
CACTGCCGAGGACGCGATCGTGAGGCTCACTCGCGAGGTTGTTCCTGGGATGATCGTCACTGGCATGGAAGTCGCGGAGATCGATGGGGCACCGAGGATGgtaaagaggtttttg----------ttctttctttgttg-tccgtcttaacgtttctcggttccag-------------------------------------------------------------------------------------

upper sequence: GRMZM2G074097_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ26284 (Selaginella moellendorffii), 5'ss of exon 1
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag
| | |||||||||| ||||||| | ||||| |||||||| || || || ||||||||||| || ||||| ||||| |||||||| || || ||||||||||| |     |  |||           |   |   || || | |  |||||     | | | |  |                                                                                      
CACTGCCGAGGACGCGATCGTGAGGCTCACTCGCGAGGTTGTTCCTGGGATGATCGTCACTGGCATGGAAGTCGCGGAGATCGATGGGGCACCGAGGATGgtaaagaggtttttg----------ttctttctttgttgtt-cgtcttaacgtttctcggttccag-------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|94472716|gb|EB701674.1|EB701674
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71772481|gb|DR970413.1|DR970413
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78090908|gb|DV519282.1|DV519282
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50336004|gb|CO531130.1|CO531130
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78124924|gb|DV543308.1|DV543308
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50328146|gb|CO523272.1|CO523272
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9953658|gb|BE640241.1|BE640241
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149085848|gb|EE175370.2|EE175370
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211199927|gb|FL305438.1|FL305438
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|37382243|gb|CF628061.1|CF628061
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|15082860|gb|BI389544.1|BI389544
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78124888|gb|DV543272.1|DV543272
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148935519|gb|EC879559.2|EC879559
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATTTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78103527|gb|DV521955.1|DV521955
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149013653|gb|EE043110.2|EE043110
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTTGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71759710|gb|DR957647.1|DR957647
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6626588|gb|AW258120.1|AW258120
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|37398373|gb|CF636499.1|CF636499
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50330187|gb|CO525313.1|CO525313
EST:     CGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: CGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78077630|gb|DV506064.1|DV506064
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|91867433|gb|EB399686.1|EB399686
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|94477165|gb|EB706123.1|EB706123
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211368950|gb|FK948429.1|FK948429
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACTGCGCCCCGAAGATG                         GGCCCGACGTTCGGCGACATGATGATCTCCGG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGG
EST: gi|86473492|gb|DY239862.1|DY239862
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149049742|gb|EE048426.2|EE048426
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211122812|gb|FL454322.1|FL454322
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|86473714|gb|DY240084.1|DY240084
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9732657|gb|BE511409.1|BE511409
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|14243670|gb|BG841335.2|BG841335
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6539027|gb|AW225166.1|AW225166
EST:     TGATCGTCNCCGGGATGGAGGTCGCCGAGATCGNCGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211538301|gb|FL466500.1|FL466500
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|30704448|gb|CD058527.1|CD058527
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9731769|gb|BE510521.1|BE510521
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211199925|gb|FL305436.1|FL305436
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|37381489|gb|CF627635.1|CF627635
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|113701444|gb|EE678948.1|EE678948
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149206816|gb|ES702412.1|ES702412
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6564024|gb|AW231646.1|AW231646
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71312479|gb|DR792767.1|DR792767
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|45847915|gb|CN071858.1|CN071858
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6918564|gb|AW400094.1|AW400094
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGGCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9254522|gb|BE344990.1|BE344990
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71319403|gb|DR796447.1|DR796447
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|93017500|gb|EB643020.1|EB643020
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71423974|gb|DR806196.1|DR806196
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6952510|gb|AW424578.1|AW424578
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211085655|gb|FL305435.1|FL305435
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148935050|gb|EC879091.2|EC879091
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6654071|gb|AW267476.1|AW267476
EST:     TGATCGTCNCCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148987638|gb|EE031513.2|EE031513
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|74244710|gb|DT652624.1|DT652624
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|60348573|gb|DN215546.1|DN215546
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76020034|gb|DT947204.1|DT947204
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|74233277|gb|DT641191.1|DT641191
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|74232338|gb|DT640252.1|DT640252
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|211313841|gb|FL198262.1|FL198262
EST:     GGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: GGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9733754|gb|BE512506.1|BE512506
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|37381154|gb|CF627436.1|CF627436
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149082157|gb|EE171338.2|EE171338
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71430280|gb|DR811330.1|DR811330
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50323781|gb|CO518907.1|CO518907
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148929269|gb|EC874965.2|EC874965
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71444062|gb|DR825112.1|DR825112
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71432867|gb|DR813917.1|DR813917
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|12973146|gb|BG268335.1|BG268335
EST:     AGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76926471|gb|DV170884.1|DV170884
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|78179556|gb|DV549929.1|DV549929
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|6654070|gb|AW267475.1|AW267475
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|60340701|gb|DN207674.1|DN207674
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|67020029|gb|CO448778.1|CO448778
EST:     GATCGTCACCGGGATGGAGGTCGNCGAGATCGACGGCGCCCCCGAG-ATG                         GGCCCGACGTTCGGCGC-ATGATGATCTCCGGCCANAAGGCCGCGCACCC
genomic: GATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCC-GAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACC-
EST: gi|148982685|gb|EE028493.2|EE028493
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|9254521|gb|BE344989.1|BE344989
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|149026856|gb|EE046209.2|EE046209
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|76909743|gb|DV163512.1|DV163512
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|50328051|gb|CO523177.1|CO523177
EST:     ACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: ACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148931283|gb|EC874120.2|EC874120
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|60399282|gb|DN232096.1|DN232096
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|113702156|gb|EE679660.1|EE679660
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|37391572|gb|CF633030.1|CF633030
EST:     TGATCGTCACCGGGATGGAGGTCGCAGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71309620|gb|DR791088.1|DR791088
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|71765747|gb|DR963684.1|DR963684
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATGGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
EST: gi|148983459|gb|EE029475.2|EE029475
EST:     TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATG                         GGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG
genomic: TGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 45 (downstream exon)
Score: 49

CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTGAAGGCACTGGGCAGGCCCAACGCCGTGGACGGGACCATCCCCG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 79

CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTGAAGGCACTGGGCAGGCCCAACGCCGTGGACGGGACCATCCCCG


Block sizes: 47 (upstream exon), 45 (downstream exon)
Score: 35

CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTGAAGGCACTGGGCAGGCCCAACGCCGTGGACGGGACCATCCCCG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 388

CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcatt ... catgacgcagGGCCCGACGTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGCGCTGAAGGCACTGGGCAGGCCCAACGCCGTGGACGGGACCATCCCCG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCGCCGAGGACGAGATCGTGCGCCTCACGCGCGAGGTCGTGCCCGGCATGATCGTCACCGGGATGGAGGTCGCCGAGATCGACGGCGCCCCGAGGATGgtcagtcattaattgaggaagacagctagctagctgctgctactccttaattgcccaccgattgatttgattgggaagacagctagctagctgctgctactccttaattatcaattcactgattaatttggtgttggtttgcatgacgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG