1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
CAATGGCGCGGCGGCGGGGAGCTGCGGGTTCGACTACGATCTCGTCATCATCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttcttttattgagtgctcggtgactcggtgtagaatcagcacggtgttttagtgagtagtgtctgttgggacgtggaatgactaggaatcgtaa...
species | Zea mays |
transcript | GRMZM2G073774_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|74241377|gb|DT649291.1|DT649291
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|148935731|gb|EC879774.2|EC879774
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|93015718|gb|EB641238.1|EB641238
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|149080928|gb|EE170014.2|EE170014
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|149105215|gb|EE290703.2|EE290703
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|71305164|gb|DR788719.1|DR788719
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|149109075|gb|EE189994.2|EE189994
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|6021434|gb|AW066362.1|AW066362
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|71444407|gb|DR825457.1|DR825457
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|148974340|gb|EE025114.2|EE025114
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|148962188|gb|EE013003.2|EE013003
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|148969109|gb|EE019845.2|EE019845
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|149014894|gb|EE044611.2|EE044611
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTAEST: gi|149086903|gb|EE176446.2|EE176446
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
EST: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAG GGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
genomic: TCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttct ... atttgttcagGGCTTAAAAACAGCAATAATTGAGGGAGATGTTGTGGGTGGGACTTGTGTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGCGCGGCGGCGGGGAGCTGCGGGTTCGACTACGATCTCGTCATCATCGGCGCGGGCGTCGGGGGTCACGGCGCCGCGCTGCACGCCGTTGAAGAGgtctgcttcttttattgagtgctcggtgactcggtgtagaatcagcacggtgttttagtgagtagtgtctgttgggacgtggaatgactaggaatcgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA