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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcagtcccctttcccctccttccaattcaattcgtcttctcgttcgcagccctaggatttgggggtctggaggggtttgatcgtttctcgccgt...

Basic information

species Zea mays
transcript GRMZM2G073535_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211042766|gb|FL410377.1|FL410377
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32915153|gb|CF019965.1|CF019965
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211230158|gb|FL409273.1|FL409273
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32915467|gb|CF020279.1|CF020279
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|15499205|gb|BI595718.1|BI595718
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211156527|gb|FL392740.1|FL392740
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211011074|gb|FL374943.1|FL374943
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211254796|gb|FL420511.1|FL420511
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211305757|gb|FL427561.1|FL427561
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211199110|gb|FL383374.1|FL383374
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|76921765|gb|DV168690.1|DV168690
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|28188096|gb|CB179706.1|CB179706
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211433580|gb|FL370258.1|FL370258
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211275053|gb|FL384325.1|FL384325
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211334569|gb|FL404956.1|FL404956
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211063352|gb|FL405209.1|FL405209
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211285944|gb|FL386655.1|FL386655
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211085791|gb|FL424013.1|FL424013
EST:     CCTTCGCCTCCAACCGCGTGNGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211026953|gb|FL376200.1|FL376200
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211085125|gb|FL402167.1|FL402167
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|91874020|gb|EB403977.1|EB403977
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211497349|gb|FL428240.1|FL428240
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211247535|gb|FL400484.1|FL400484
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211307645|gb|FL422279.1|FL422279
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211516500|gb|FL413391.1|FL413391
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32915137|gb|CF019949.1|CF019949
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211042926|gb|FL416917.1|FL416917
EST:     CCTTCGCCTCCNACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211212956|gb|FL427990.1|FL427990
EST:     CTTCGCCTCCAACCGCGTGCGCTCCACGSCTTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CTTCGCCTCCAACCGCGTGCGCTCCACG-CCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211360773|gb|FL397053.1|FL397053
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|28930990|gb|CB334351.1|CB334351
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211048901|gb|FL419489.1|FL419489
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|89758566|gb|DY687700.1|DY687700
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211137601|gb|FL389979.1|FL389979
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCDGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|7238123|gb|AW573345.1|AW573345
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211401208|gb|FL425455.1|FL425455
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32915018|gb|CF019830.1|CF019830
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32864981|gb|CF004663.1|CF004663
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211006247|gb|FL408517.1|FL408517
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211163031|gb|FL401341.1|FL401341
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211490127|gb|FL369784.1|FL369784
EST:     TCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAMAAGC
genomic: TCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCA-AA-A
EST: gi|14244595|gb|BG842533.2|BG842533
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|61119129|gb|DN560090.1|DN560090
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211142008|gb|FL420863.1|FL420863
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32937269|gb|CF042088.1|CF042088
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211108516|gb|FL304066.1|FL304066
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32864386|gb|CF004068.1|CF004068
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|85152766|gb|DW587846.1|DW587846
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32910492|gb|CF015304.1|CF015304
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211212010|gb|FL385207.1|FL385207
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGRGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211207669|gb|FL419154.1|FL419154
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211156671|gb|FL403861.1|FL403861
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211042145|gb|FL385023.1|FL385023
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211129120|gb|FL371880.1|FL371880
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|6021595|gb|AW066523.1|AW066523
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211426213|gb|FL392510.1|FL392510
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211258667|gb|FL369168.1|FL369168
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211539652|gb|FL413038.1|FL413038
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGSCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211106682|gb|FL304033.1|FL304033
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|32865535|gb|CF005217.1|CF005217
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211176640|gb|FL423185.1|FL423185
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211431054|gb|FL372124.1|FL372124
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211468697|gb|FL380602.1|FL380602
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211079514|gb|FL399428.1|FL399428
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211153095|gb|FL375819.1|FL375819
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|6012307|gb|AW061663.1|AW061663
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211332492|gb|FL407989.1|FL407989
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211134617|gb|FL369499.1|FL369499
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA
EST: gi|211229493|gb|FL371563.1|FL371563
EST:     CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAG                         CTTCTGCATAAGAACAACAAATCAAAA
genomic: CCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1024

GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 1559

GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1933

GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1355

GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcag ... attttggcagCTTCTGCATAAGAACAACAAATCAAAA


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCAAGCCAGACAGAAGACAGCCCGTCAGCCCCTCTCGTTTTTCATCCGCCTTCGCCTCCAACCGCGTGCGCTCCACGCCTCCTCCAGGAAAGCGAGAGgtgagcgcagtcccctttcccctccttccaattcaattcgtcttctcgttcgcagccctaggatttgggggtctggaggggtttgatcgtttctcgccgt

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