1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTTCTCCTCGCCTCGCCTTGGTGTTCACGCCGTCGCTAGCGCCTGCCGCGGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgcccgctctttccccttaccacttcctcccggtgtggatctgggctgtctacgggtttcagatttacgggggcgtaagcaagattgctgaga...
species | Zea mays |
transcript | GRMZM2G073498_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCGAMSSTTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211220849|gb|FL004686.1|FL004686
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAMSTTTCTGTCCTCCCNGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTRGCEST: gi|211218780|gb|FL004672.1|FL004672
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211220862|gb|FL004699.1|FL004699
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GCGAACG-TTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211222924|gb|FL004709.1|FL004709
genomic: GCGAA-GCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211220863|gb|FL004700.1|FL004700
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211218786|gb|FL004678.1|FL004678
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GCGAAS-TTCCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211222921|gb|FL004706.1|FL004706
genomic: GCGAAGCTTC-TGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GCGAACG-TTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211218789|gb|FL004681.1|FL004681
genomic: GCGAA-GCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211218792|gb|FL004684.1|FL004684
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211220860|gb|FL004697.1|FL004697
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|78076684|gb|DV505118.1|DV505118
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211220857|gb|FL004694.1|FL004694
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGTCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211218788|gb|FL004680.1|FL004680
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211220855|gb|FL004692.1|FL004692
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211454555|gb|FK953975.1|FK953975
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: CTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTGGCEST: gi|211220859|gb|FL004696.1|FL004696
genomic: CTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GCGAACG-TTCTGCCCTCCCCGGMGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211220858|gb|FL004695.1|FL004695
genomic: GCGAA-GCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGCEST: gi|211222925|gb|FL004710.1|FL004710
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
EST: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAG GAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
genomic: GGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgc ... ctgattacagGAAGATGGCTGGCGGCTTCAGGGTACTGCATCTGGTCAGGCCTTTTCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTCCTCGCCTCGCCTTGGTGTTCACGCCGTCGCTAGCGCCTGCCGCGGCGAAGCTTCTGCCCTCCCCGGCGCCGGGCTCGGGTCGTCGTCGGCCAGgtaaatctgcccgctctttccccttaccacttcctcccggtgtggatctgggctgtctacgggtttcagatttacgggggcgtaagcaagattgctgaga
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