1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCAGTGGACATAAAGACACCATACGAGAAGATGGTGGAAAACATGGTTGAATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcactcatgccgaaagatatttctgatgcaaatgcaatgttcgtggcttcaaattaatgtagtaatagtaccaatcacacaagtttaggaatttt...
species | Zea mays |
transcript | GRMZM2G072865_T05 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32925973|gb|CF030785.1|CF030785
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTACAGCGCCTGCCAEST: gi|32925914|gb|CF030726.1|CF030726
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32926844|gb|CF031656.1|CF031656
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32929777|gb|CF034589.1|CF034589
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32924793|gb|CF029605.1|CF029605
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32926859|gb|CF031671.1|CF031671
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32926579|gb|CF031391.1|CF031391
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCAEST: gi|32925296|gb|CF030108.1|CF030108
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
EST: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTG GTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
genomic: AATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcact ... cattttgcagGTAGGTCTTATCTATGTTGTATTGATTGCGGTAGTTTTGCAGCGCCTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGTGGACATAAAGACACCATACGAGAAGATGGTGGAAAACATGGTTGAATTTGGGTCACCGGACAAGAGGTCTGGCGGCATGCTCAATTCTGCCCTGgtaaggcactcatgccgaaagatatttctgatgcaaatgcaatgttcgtggcttcaaattaatgtagtaatagtaccaatcacacaagtttaggaatttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagata