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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattttgccacgtcctttttggctggtgagatttatgcgtgctgcgtttgttttgcag

Basic information

species Zea mays
transcript GRMZM2G072315_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g54890.2 (Oryza sativa), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggat--ccgtccggtttcattttgccacgtcctttttgg----ctggtgagatttatgcgtgctgcgtttgtttt--gcag
    ||||||||| ||||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||  |||||||||| ||||||||| |||||||||    ||||  |   | | |||||  |  |||| || |   ||| ||  ||  |||  |    ||| |  |||||  |      | | |   |    ||||
AGTACCTCCGCTTCCTCCGCAAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgt----aagctgcggatccatggatttctctccgtttcccccttgtcatttcgatttctgatttctgttctgattttgggacctcgtggtgaatccccgcag

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g54860.1 (Oryza sativa), 5'ss of exon 1
-----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacc-------tgcctggatccgtccggtttcattttgccacgtcctttttggctggtgagatttatgcgtgctgcgtttgttttgcag--------------
     ||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||||||||||| ||||  |||||||||| ||||||||| |||||||||  |  |   | |||       ||   |||||  |  | ||||  |  ||     |||| |    | |     | |     |  |||||  |    || |              
AAGTACCTCCGCTTCCTCCG-AAGAGGATGAACACCAAGCCCTCCCATGGCCCCATCCACTTCCGCTCCCCCGCCAAGATCCTCTGGCGCACCGTCCGCGGgtaagctaatcaaaccccgaagctgtgcggatcaatg-gatttctctccgctttccccttgtcatttcgattcctgttctgattttgcgtcggcggcgcggtgaatcccctgcag

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G46850.1 (Glycine max), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagca-acacctgcctggatccgtccggt------ttcattttgccacgtcctttttggctggtgagatttatgcgtgctgcgtttgttttgcag
    | | || || ||||||||||| |||||||||||||| || || || |||||||| ||||| || ||   ||||||| | ||||||||| | || ||||  | |  |  || | |  ||   |||  ||         || |||     | |   || |       |  | || ||      ||  | ||| | |   
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcagcactctcacccttttctttctccccccaaaaaaacattaattgattaaagatattatctttcaattgggttcattta-aatgtctctgtataggta

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA08G46860.1 (Glycine max), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaa-gcaacacctgcctggatccgtccgg--tttcattttgccacgtcctttttggctg--gtgagatttatgcgtgctgcgtttgttttg-cag-
    | | || || ||||||||||| |||||||||||||| || || || |||||||| ||||| || ||   ||||||| | ||||||||| | || ||||  |||  |  || | |  ||   ||           | | |||          || | | ||   |  | || ||    | ||  | ||| | |  || 
AGTACTTGCGTTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCACGGCCCCATCCATTTCCGTGCACCCGGCAAGATCTTCTGGCGCACCGTTCGTGGgtcagtactgtcacccttttctttctctaaaaaaaacattaatttattgaagatattatcgttgcaattgggttcatttaag-tgtctctgtataggtaga

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA15G13670.1 (Glycine max), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattt--------tgccacgtcctttttggctggtgagatttatgcgtgctgcg-tttgttttgcag---------
    | |  | || |||||||| || ||||||||||| || |||||||| || |||||||||||||||||  |||||||| | ||||||||| | || |||| |||  |  ||   |   |       |    | |||| |        |    |    | ||     | || ||  | |  ||| |    | |||| |   |         
AATACTTGAGATTCCTCCGCAAACGCATGAACACCAAACCCTCCCATGGCCCTATCCACTTCCGCGCCCCAGCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtctgtcactttttgttattattatttcatctcatgtataaaacctagttcaatttcttaaaaagttgggaactttttgtgttttaatctgttgttgggtttttgtag

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G13580.1 (Glycine max), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgc-ctggatccgtccggtttcattttgcc-acgtcctttttggctggtgagatttatgcgtgctgcgtttgttttgcag-----
    | |  | || |||||||| || |||||||||||||| ||||| || ||||||||||||||||| || ||||||||| | ||||||||| | || |||| |||         ||    |   |   |||  | |||   | |  |  |        | || ||   ||| |   || ||   | |||  | |      
AGTACTTGAGGTTCCTCCGCAAACGCATGAACACCAAGCCTTCCCACGGCCCCATCCACTTCCGCGCACCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtctgtttttcttttctttgttctttttttcctttctcacaatacttatatataacaatgttgttgttttttttcgttgttgttctcgttc-gtaatttag

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA09G02790.1 (Glycine max), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattttgccacgtcctttttggctggtgagatttatgcgtgctgcg-tttgttttgcag---------
    | |  | || || ||||| || ||||||||||| || |||||||| |||||||||||||| ||||| ||||||||| | ||||||||| | || ||||  ||   ||  ||   | |   |   |     || | ||          ||| |  ||  |   |   | ||||| |    |||||  ||  |         
AATACTTGAGGTTCCTTCGCAAACGCATGAACACCAAACCCTCCCATGGCCCCATCCACTTCCGTGCCCCCTCCAAGATCTTCTGGCGCACCGTTCGTGGgtcagt---cattactcactttttttttttttactttaattccttttaaagtttataactt-tccaacacaagcgtgttttaatttgtcgtggggtgtttttgt

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv07s0005g06490.t01 (Vitis vinifera), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattttgccacgtcctt--tttggctggtgagatttatgcgtgctgcgtttgttttgcag----
    |||  | || ||||||||||| |||||||||||||| || |||||||||||||||||||||||||| ||||||||||| ||||| |||||||| ||||| || |  || |  |  |||    | |        |  |      ||| |   | ||||      | || |   |  ||     ||||| |       
AGTACCTGAGGTTCCTCCGCAAGCGCATGAACACCAAGCCCTCTCATGGGCCCATCCACTTCCGCGCCCCCTCCAAGATCCTCTGGCGTACCATCCGTGGgtgagttattaatatttttctgttgtccttatcagaaaaatgagagtgtcatgggtctggccctcctggttcaaatgatctaatgctgtttggtttttct

upper sequence: GRMZM2G072315_T03 (Zea mays), 5'ss of exon 1
lower sequence: Vv05s0029g00020.t01 (Vitis vinifera), 5'ss of exon 1
----CCTCCGCTTTCTCCGCAAGCGGATGAACACCAAGCCATCCCATGGGCCCATCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaacacctgcctggatccgtccggtttcattttgccacgt-------cctttttggctggtgagatttat------gcgtgctgcgtttgttttgcag--------------------------------
     || ||||| ||||||||||| |||||||||||||| |||||||| || |||||||||||||| || ||||||||||| ||| | ||||| |||||||| |   |    | |    |  ||   || |  ||   | | |||||          |||||   |  |   ||||||         || ||| ||  ||  ||                                  
AGTATCTTCGCTTCCTCCGCAAGCGCATGAACACCAAGCCTTCCCATGGCCCAATCCACTTCCGCGCTCCCTCCAAGATCCTCTGGAGGACCATACGCGGgtgagcttgacttatcattttatatttttctgcattttctattccacgaaacgaagtttttttcattattttcatttatttattaatatgatgctttgattgagccaataaaatcccaaaatctctttctggtttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211074304|gb|FK951901.1|FK951901
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211068817|gb|FK951859.1|FK951859
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGT                         GATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|89759041|gb|DY687990.1|DY687990
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211077038|gb|FK951906.1|FK951906
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211074297|gb|FK951894.1|FK951894
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|14529422|gb|BI096555.1|BI096555
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGC--G-G-                         GATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|9566387|gb|BE475896.1|BE475896
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211077035|gb|FK951903.1|FK951903
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211077047|gb|FK951915.1|FK951915
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|9731552|gb|BE510304.1|BE510304
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211518733|gb|FK951840.1|FK951840
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211077041|gb|FK951909.1|FK951909
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211074298|gb|FK951895.1|FK951895
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211071560|gb|FK951881.1|FK951881
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211071564|gb|FK951885.1|FK951885
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|211068820|gb|FK951862.1|FK951862
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|91048018|gb|EB158436.1|EB158436
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGC--G-G-                         GATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
EST: gi|9461298|gb|BE453663.1|BE453663
EST:     TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGG---                         -ATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA
genomic: TCCACTTCCGCGCCCCGTCCAAGATCCTGTGGCGCACCATCCGCGGGTGTgtaagcaaca ... tgttttgcagGATGATTCCGCACAAGACCAAGAGGGGGGAGGCGGCTCTGGCGAGGCTCAA