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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttcttaagtgtggtgctgatactgaaattaatattttag

Basic information

species Zea mays
transcript GRMZM2G071441_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA10G23680.1 (Glycine max), 5'ss of exon 1
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtgg---ggcaacatttctattttttat--tactgttgtttcttaagtgtggtgctgatactgaaattaatat-tttag
 |||| |   |||||||||||||| ||||| |||||||| ||||| ||||| ||||| || || ||||| || || ||||||||| |||| || || |||||      | | ||| |  | ||| ||   |  | || |||  ||||      ||| ||    |||||  | | || ||
AAAAAAGGAAACTGGTTATGTTGGACTGAAAAATCAAGGAGCTACATGTTATATGAATTCTCTGCTTCAAACATTGTACCACATTTCTTATTTCCGAAAGgttacccagtagcatataaactttgtaaggtcttatttttttataaggaaatagctcatgtataaatttttttgttcag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA20G11300.1 (Glycine max), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgt-ggggcaacatttct-attttttattactgttgtttcttaagtgtggtgctga-tactgaaattaatattttag---------------
||| | |  |||||| |||||||| || ||||| ||||| ||||||||||| ||||| || || ||||| || || ||||| |||||||| ||  | |||||  |  |    | ||| ||||| | || |      |||  | ||    ||   | || ||  |    | ||   |               
CAAGAAGGAGACTGGCTATGTTGGGCTTAAGAACCAAGGAGCTACCTGTTATATGAATTCTCTACTTCAAACCTTGTACCATATTCCTTATTTCAGAAAGgttagaactgtttgtcttattttgttttgcctgaagttcacatgtccattgaaaagtaatgggaagtttgttcctggatattacatttcag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: AT3G11910.2 (Arabidopsis thaliana), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttcttaagtgtggtgctgatact---gaaattaatattttag-------------------------
 ||||    ||| |||| |||||| || || || ||||| ||||||||||||||||| || || || ||||||||||||||||| ||||||||| | ||||| ||       || | |||| | || || ||   |      || | |    | | |   || |   | |||| ||                         
AAAAAAAGAGACAGGTTTTGTTGGACTAAAAAACCAAGGTGCTACCTGTTACATGAATTCTCTCCTGCAGACTTTATACCACATACCTTACTTTAGAAAGgttggatgcttgttttgttttctttttctatttgcttaatcatgagttcgcaaaattctagagaaagacatttgagtaatgcacccatcctttccttgtag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0073g00610.t01 (Vitis vinifera), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttcttaagtgt------------ggtgctgatactgaaatta-atattttag
 || | |  ||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||||  | ||||| |||||||||||  | ||||| ||| ||   |  | |||  |  |    ||||||| |   | |             |  ||     || || |   ||||| ||
AAAGAAGGAGACTGGTTATGTTGGACTGAAGAACCAAGGAGCTACCTGTTACATGAATTCCCTTCTTCAGACACTCTACCATATTCCTTACTTCAGAAAGgttgggaaattctcttttttcctcctttacttgtttcattgatattatttgcaagaaagcactacatttggaactgtgtatttcag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv06s0009g00960.t01 (Vitis vinifera), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttcttaagtgtggtgctga---tactgaaat-------taatattttag---------------
 |||| |   |||||||||||||| || ||||| ||||| || || |||||||||||||| || || || ||| | || || ||||| |||||| | |||||     | ||||  | |||||| |   |  | | | |||  |||  |  |||   || |  ||         ||| |||| |               
AAAAAAGGAAACTGGTTATGTTGGACTTAAGAACCAAGGAGCAACTTGTTACATGAACTCTCTCCTCCAAACTCTCTATCATATTCCCTACTTTAGAAAGgttaataaccattgttcttttttctacattgtctctgttacatgtcttcttgaagatatttgaaaagggtaacaattttttggatcatgttttttcag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv08s0032g00600.t01 (Vitis vinifera), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgt--ggggca----acatttctattttttattactgttgttt-cttaagtgtggtgctgatactgaaattaatattttag--------------
 |||| |  |||||||| |||||| |||||||| ||||||||||| ||||||||||| || ||  | || ||| | ||||| |||||||| ||  | |||||  || | |    | |||| | || ||  ||| | || |||  || | || |   || | |   ||     |||||| |              
AAAAAAGGAGACTGGTTTTGTTGGACTGAAGAACCAAGGGGCTACTTGTTACATGAATTCTCTCTTACAAACTCTCTACCATATTCCTTATTTCAGAAAGgttaggagtatcttatatttttcttattgtttattattatttatttcaatgagtatctaaaaggaaataccttattttggactatgtatgtcag

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S123_138V6.1 (Physcomitrella patens), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgt---------ggggcaacatttctattttttattactgttgtttcttaagtgtggtgctgatactgaaattaatattttag------------------
 || |    ||| |||||||||||  ||||||||||||| || || || |||||||| || || || ||||| || || ||| | || ||||||||||||||         |     |||  ||  || |  |||||  |      || ||||   | | |   | | |     |||                       
GAAGAAAGAGACAGGTTATGTTGGATTGAAGAATCAAGGAGCGACATGCTACATGAATTCTCTCCTCCAGACGTTGTATCACCTGCCCTACTTTCGGAAGgttatttccctgccatcacagatcatttctgaattacattctgcaattcagtgcaattcagtgccaggaggctctatccagttttcggtttattgtgtct

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ13603 (Selaginella moellendorffii), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttctta-agtgtggtgctgatactgaaattaatattttag
 || | |  ||||||||  |||||  |||||||||| || || ||||| ||||||||||| || ||||||||  | ||||||||||||||||| || |||||     |  || ||| | |    | ||||||   ||| | |||   || ||  || |  |             
GAAGAAGGAGACTGGTTTCGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTACTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaac-tattatctct-tatcccttgactgttcggtctcacagttaagttcttgtaattcag------------

upper sequence: GRMZM2G071441_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ19227 (Selaginella moellendorffii), 5'ss of exon 5
CAAAAGGATGACTGGTTATGTTGGCCTGAAGAATCAAGGGGCTACCTGTTACATGAACTCCCTTCTTCAGACTTTATACCACATTCCTTACTTTCGGAAGgtggggcaacatttctattttttattactgttgtttctta-agtgtggtgctgatactgaaattaatattttag
 || | |  |||||||| ||||||  |||||||||| || || ||||| ||||||||||| || ||||||||  | ||||||||||||||||| || |||||     |  || ||| | |    | ||||||   ||| | |||   || ||  |  |  |             
GAAGAAGGAGACTGGTTTTGTTGGGTTGAAGAATCAGGGTGCGACCTGCTACATGAACTCACTGCTTCAGACGCTTTACCACATTCCTTACTTCCGTAAGgtaac-tattatctct-tatcccttgactgttcggtctcacagttaagttcttgtgattcag------------