1 5' 3' | 2 5' 3' | 3 5' 3' |
CCGGCGTCGGAGGCGCTGCCGCGGGGCCAGGCCATCGGCGGGTACATCTTCGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgatattatattattatcttcggcgggtacgatgatgaacaccaccagcagcagcagcatactgattgtttgatgggtggaatggattggaattcaattgatgcag
species | Zea mays |
transcript | GRMZM2G071154_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|8367109|gb|BE050054.1|BE050054
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACCATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|50336543|gb|CO531669.1|CO531669
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|149082668|gb|EE171878.2|EE171878
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|60338891|gb|DN205864.1|DN205864
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|93015747|gb|EB641267.1|EB641267
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTTTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGGTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|211386348|gb|FL456698.1|FL456698
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACCATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCGGTGCGGGCTATCCGCCCGGGACTGCEST: gi|78022808|gb|DV491195.1|DV491195
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: GGTCTGCAACAACGACATTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|149088944|gb|EE178087.2|EE178087
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|149090354|gb|EE179660.2|EE179660
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: AACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|71444740|gb|DR825790.1|DR825790
genomic: AACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGCEST: gi|211171601|gb|FL423137.1|FL423137
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
EST: CGTCTGCAACAACGACACCATGGACGAGAACCTCAGGAGGGAGCTGTTCG GGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
genomic: CGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgata ... attgatgcagGGCTGCCGTCCAGGTACAGGGACTCTGTGCGTGCTATCCGCCCGGGACTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGGCGTCGGAGGCGCTGCCGCGGGGCCAGGCCATCGGCGGGTACATCTTCGTCTGCAACAACGACACTATGGACGAGAACCTCAGGAGGGAGCTGTTCGgtgagcgatattatattattatcttcggcgggtacgatgatgaacaccaccagcagcagcagcatactgattgtttgatgggtggaatggattggaattcaattgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT