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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGGCGACGCCCAAATCGAGCGACCTGATCGAGGCCCCTCGCCCCAACTCGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttttttgccttcctcccctcctcctggagccgcgtgcggcgtgccccaggactgggctgggggcttctgcttgattcgaatcagcgtgcctgt...

Basic information

species Zea mays
transcript GRMZM2G069970_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086197|gb|DV514590.1|DV514590
EST:     CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAG                         ATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
genomic: CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttt ... tggactacagATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
EST: gi|211178849|gb|FL219806.1|FL219806
EST:     CACTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCACCCACGCCAAG                         ATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
genomic: CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttt ... tggactacagATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
EST: gi|148970773|gb|EE021521.2|EE021521
EST:     CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAG                         ATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
genomic: CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttt ... tggactacagATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
EST: gi|149085363|gb|EE174870.2|EE174870
EST:     CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAG                         ATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
genomic: CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttt ... tggactacagATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
EST: gi|93283061|gb|EB675325.1|EB675325
EST:     CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAG                         ATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT
genomic: CGCTGAATCCCAATCCGAGCCCGCCAATTGGGCGCCCCGCCCACGCCAAGgtgcgacttt ... tggactacagATGAAGCGAGCTCGAAGGCGTATGTGCAAGAGATGACTGATGAGGGATGCT