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CAACGGCGACGTCGAGGAGGTGAGCCGCAACTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgtttctcccctgacgtttcgttggaattttggttaggttttaccatttcgaaatatgaaattatctatttagttttttgaatatttatctat...
species | Zea mays |
transcript | GRMZM2G069916_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|211423515|gb|FL160031.1|FL160031
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|76920400|gb|DV168155.1|DV168155
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|87157671|gb|DY402460.1|DY402460
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAEST: gi|148973852|gb|EE024993.2|EE024993
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|22549221|gb|BU101422.1|BU101422
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCATTCTCTTCAACTGCGGAAAEST: gi|88756297|gb|DY540438.1|DY540438
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|211142603|gb|FL018649.1|FL018649
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|211420922|gb|FL160021.1|FL160021
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|211420926|gb|FL160025.1|FL160025
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|9731138|gb|BE509890.1|BE509890
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: CCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGCTCTAAGATTCATTCTCTTCAACTGCGGAAAEST: gi|211420930|gb|FL160029.1|FL160029
genomic: CCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGGAAEST: gi|211420928|gb|FL160027.1|FL160027
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCGAAGATTCACTCTCTTCAACTGCGGAAAEST: gi|71312972|gb|DR793008.1|DR793008
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
EST: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACG AAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
genomic: GCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgt ... gtgattgcagAAAATGGATCTCGGTCCTTGTTCTAAGATTCACTCTCTTCAACTGCGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACGGCGACGTCGAGGAGGTGAGCCGCAACTACTACGACCGCGACGTCTGCCGCCTCTTCCTCGCCGGTCTCTGCCCACACGACCTCTTTCAGCTCACGgtatcctcgtttctcccctgacgtttcgttggaattttggttaggttttaccatttcgaaatatgaaattatctatttagttttttgaatatttatctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA