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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTCTTCCCCTCTCCACTCCCAATCTTATCGTCGCCTCCCTCGACGTCGCTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccccttcacgcctgcgcgctaggttcttgatttagaccgtttcctgtgttgtccgtgtcggaatctgctggtcccgtctttcgaacccaacga...

Basic information

species Zea mays
transcript GRMZM2G069765_T04
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33093832|gb|CF053826.1|CF053826
EST:     CTACTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|6021027|gb|AW065955.1|AW065955
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229393|gb|FL136781.1|FL136781
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229384|gb|FL136772.1|FL136772
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229382|gb|FL136770.1|FL136770
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|78083040|gb|DV511433.1|DV511433
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231449|gb|FL136785.1|FL136785
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231451|gb|FL136787.1|FL136787
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211231448|gb|FL136784.1|FL136784
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229392|gb|FL136780.1|FL136780
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|31357629|gb|CD441986.1|CD441986
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32865501|gb|CF005183.1|CF005183
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|32908744|gb|CF013557.1|CF013557
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|211229391|gb|FL136779.1|FL136779
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCAAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
EST: gi|149082543|gb|EE171738.2|EE171738
EST:     CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGA                         AGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC
genomic: CTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccc ... gtctgaacagAGGACTCGCTGAAGCGGGAGTCTGGCGCGAAGGTTCACCAAGCCAACATCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCTCTTCCCCTCTCCACTCCCAATCTTATCGTCGCCTCCCTCGACGTCGCTGCTGCCTCCACTTCACCATGGCGCTTCACGCCCCGGTCCTCGTTCTGAgtaagcgccccttcacgcctgcgcgctaggttcttgatttagaccgtttcctgtgttgtccgtgtcggaatctgctggtcccgtctttcgaacccaacga

- - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC