1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CGAGAGAGCGGGAGACGAGTCGCGGCGCCTCTGCTGTGCTGTCTTCTTCTCCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttcggccttcccattgggactcctccgtgactccgtctccctggggtcacgggtccgcgccgcctcagatccgggcaacccgttgcgacaccg...
species | Zea mays |
transcript | GRMZM2G069198_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAG AACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAAEST: gi|211420188|gb|FL124226.1|FL124226
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttc ... gtgcttgcagAACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAA
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAG AACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAAEST: gi|211420190|gb|FL124228.1|FL124228
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttc ... gtgcttgcagAACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAA
EST: CCCCTCTGCTCTGCGTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAG AACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAAEST: gi|93014188|gb|EB639708.1|EB639708
genomic: CCCCTCTGCTCTGC-TTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttc ... gtgcttgcagAACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAA
EST: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGA-CC-C-G --CAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAA
genomic: CCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttc ... gtgcttgcagAACAGGGGGTTCAGACTTCTTGGTGAGAGCGATATGAGTGTCCCAGGTCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAGAGCGGGAGACGAGTCGCGGCGCCTCTGCTGTGCTGTCTTCTTCTCCCCCTCTGCTCTGCTTCGGCTCCTCACGCGGCCTCGCCGAGACCCGCAGgtacgccttcggccttcccattgggactcctccgtgactccgtctccctggggtcacgggtccgcgccgcctcagatccgggcaacccgttgcgacaccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgccgcc