Skip to another splice site:
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctccttccccatcagctcgcagccgccgtgggtgcttcagtgaagggaagaaccagagagatacttagtcgattcacctgttgttcaatgctgctg...

Basic information

species Zea mays
transcript GRMZM2G068244_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G068244_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g60740.1 (Oryza sativa), 5'ss of exon 1
GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAG--TCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctccttccccatcagctc-gcagccgccgtgggtgcttcagtgaagggaagaaccagagagatacttagtcgattcacctgttgttcaatgctgctg------
   | |||  |    ||  ||   || ||| |   |    ||||||||| |||  | |  |||| || ||||| |||||||||||||||||||||||||||||| | | || | || ||  | | |  ||| |||   | | |    ||||    ||    || | | |    |||   |||   | || ||    |  |  |      
-CCTCGTGAACTCGTCGCCTTCG-TCTTCGTCTCGATCTCCATGGCGGACTCGAGCGCGGCCCGCCCCACCGTCCTCGTCACCGGCGCCGGCGGCCGCACAGgtgggtactcctccgtcctccctgtggcctccgactgcgat---atgaatcccag---tagcgcgctctccagt-acttctttttttttttgggggggtgggggggg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211286491|gb|FL310015.1|FL310015
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211412367|gb|FL346496.1|FL346496
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211112328|gb|FL329510.1|FL329510
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAAWTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|20803051|gb|BQ294101.1|BQ294101
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211337955|gb|FL350486.1|FL350486
EST:     GGCCACTTCCCCTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211132799|gb|FL366555.1|FL366555
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTTTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211277743|gb|FL328157.1|FL328157
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211115046|gb|FL357306.1|FL357306
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211096669|gb|FL353593.1|FL353593
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211001839|gb|FL114785.1|FL114785
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211318218|gb|FL331873.1|FL331873
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211469582|gb|FL315160.1|FL315160
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211220634|gb|FL341039.1|FL341039
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211196275|gb|FL364467.1|FL364467
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211122932|gb|FL351238.1|FL351238
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211236833|gb|FL308490.1|FL308490
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211181490|gb|FL345839.1|FL345839
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211316498|gb|FL348245.1|FL348245
EST:     GGCCACTTCCCCTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211335177|gb|FL319521.1|FL319521
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|213179283|gb|FM188490.1|FM188490
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211540782|gb|FL336429.1|FL336429
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211409156|gb|FL322203.1|FL322203
EST:     GGCCACTTCCCGTCCAANCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTG
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTG
EST: gi|211198077|gb|FL339624.1|FL339624
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTAC
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTAC
EST: gi|211098075|gb|FL308898.1|FL308898
EST:     GGCCACTTCCCCTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCASKN                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211476034|gb|FL363764.1|FL363764
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211479880|gb|FL310027.1|FL310027
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211239882|gb|FL352731.1|FL352731
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GC-AAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211283841|gb|FL366659.1|FL366659
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211537318|gb|FL320573.1|FL320573
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211272761|gb|FL349909.1|FL349909
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211412620|gb|FL354792.1|FL354792
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211099171|gb|FL354079.1|FL354079
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211297500|gb|FL325965.1|FL325965
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211462796|gb|FL342108.1|FL342108
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211517611|gb|FL357265.1|FL357265
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211100738|gb|FL316242.1|FL316242
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|13490558|gb|BG517322.1|BG517322
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211417179|gb|FL337735.1|FL337735
EST:     GCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAKG                         GC-AAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCA
genomic: GCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACA-Ggtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCA
EST: gi|211277770|gb|FL330868.1|FL330868
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211077629|gb|FL313497.1|FL313497
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211133201|gb|FL314483.1|FL314483
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211047467|gb|FL364281.1|FL364281
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAASRAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211465220|gb|FL336847.1|FL336847
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211205798|gb|FL341896.1|FL341896
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211254992|gb|FL317228.1|FL317228
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211002341|gb|FL358925.1|FL358925
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211470442|gb|FL344039.1|FL344039
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211414488|gb|FL334079.1|FL334079
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211383905|gb|FL356604.1|FL356604
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211404942|gb|FL354737.1|FL354737
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211514887|gb|FL335485.1|FL335485
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211132284|gb|FL314479.1|FL314479
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211088423|gb|FL316647.1|FL316647
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211344960|gb|FL343410.1|FL343410
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211235405|gb|FL352697.1|FL352697
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211069778|gb|FL326749.1|FL326749
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211147963|gb|FL321978.1|FL321978
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|13198686|gb|BG354488.1|BG354488
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211109536|gb|FL325842.1|FL325842
EST:     GGCCACTTCCCCTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAKAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211098557|gb|FL329016.1|FL329016
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         GCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211320725|gb|FL358336.1|FL358336
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAK                         GC-AAATTGTCTACAACAAACTGAAAG
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAG
EST: gi|211414922|gb|FL346514.1|FL346514
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
EST: gi|211105758|gb|FL317208.1|FL317208
EST:     GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAG                         G-CAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA
genomic: GGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 99

GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATTGGGGCAGCCGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 233

GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATTGGGGCAGCCGG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 103

GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATTGGGGCAGCCGG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 106

GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctcctt ... ttgatcttagGCCAAATTGTCTACAACAAACTGAAAGAGAGGTCTGAGCAGTTCGTGGCAAGAGGGCTAGTCAGGACAGAGGAGAGCAAGCAGAAGATTGGGGCAGCCGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTTGGTGTCCAGCACGAATTGAATCGTCGCCAGAAGTCATGGCGGATTCGGCCACTTCCCGTCCAACCGTTCTCGTCACCGGCGCCGGCGGCCGCACAGgtagctccttccccatcagctcgcagccgccgtgggtgcttcagtgaagggaagaaccagagagatacttagtcgattcacctgttgttcaatgctgctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcccc