1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCCTCCCCCGGCGTGCGCTCCCTCCTGTCTCTCTTGGCGACGACTGGGCAACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgccactttcccctcccgctgtgcgaaaccgagcacccaaaccctaacttactatttgtattcggatctgatctaattacaggtcctacttac...
species | Zea mays |
transcript | GRMZM2G068151_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|93282186|gb|EB674450.1|EB674450
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|71330078|gb|DR801779.1|DR801779
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|78116848|gb|DV535235.1|DV535235
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211225789|gb|FL287043.1|FL287043
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211225793|gb|FL287047.1|FL287047
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211223729|gb|FL287034.1|FL287034
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211225791|gb|FL287045.1|FL287045
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|30087714|gb|CB885920.1|CB885920
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: GACG-TCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCAC-GGTCTCAGATCCAEST: gi|50328480|gb|CO523606.1|CO523606
genomic: GACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211225787|gb|FL287041.1|FL287041
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|211223732|gb|FL287037.1|FL287037
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCAEST: gi|71321873|gb|DR797626.1|DR797626
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
EST: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAG GAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
genomic: ACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgc ... aattatgcagGAATTTTCTCAGCTGTGCCAATGATGGGTTGCTTCACTGTTCTCAGATCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCCTCCCCCGGCGTGCGCTCCCTCCTGTCTCTCTTGGCGACGACTGGGCAACGGTCGCAGCTGTATGTTCGAGCCCTTCGCCGACGACGTTCACCACCAGgtacggacgccactttcccctcccgctgtgcgaaaccgagcacccaaaccctaacttactatttgtattcggatctgatctaattacaggtcctacttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctccc