1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGCGCTCGCTCGCTCCGTGACCGGCTGCCTCTCCGCTCCACCCCTGCGCTGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgctctgtccctccatccctcgcctcctctcggtccgcgccgcaatgcgggtccctgcctcggcccaggcggcggcggcggcggggcagccttg...
species | Zea mays |
transcript | GRMZM2G067764_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|211012029|gb|FL416507.1|FL416507
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACG TGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCCEST: gi|89760976|gb|DY689173.1|DY689173
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgct ... tgcagatcagTGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCC
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|89250850|gb|DY622636.1|DY622636
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|74245364|gb|DT653278.1|DT653278
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|211526831|gb|FL377019.1|FL377019
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|88752440|gb|DY536581.1|DY536581
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|211533716|gb|FL414645.1|FL414645
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACG TGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCCEST: gi|149087020|gb|EE176561.2|EE176561
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgct ... tgcagatcagTGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCC
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGATCAGEST: gi|211229485|gb|FL371555.1|FL371555
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCG--AC-A-C-Ggtgcgtcgct ... tgcaga
EST: TGTGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACG TGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCCEST: gi|211017540|gb|FL416065.1|FL416065
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgct ... tgcagatcagTGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCC
EST: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACG TGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCC
genomic: TGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgct ... tgcagatcagTGTGACTGAGAGGGGAGGGTTTCCAGTCAGTCATTTATGAATCCTGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCGCTCGCTCGCTCCGTGACCGGCTGCCTCTCCGCTCCACCCCTGCGCTGCGACCGGAGGCGACCGCGCCCCGCGGTGGCGCTGCGACCCGCGACACGgtgcgtcgctctgtccctccatccctcgcctcctctcggtccgcgccgcaatgcgggtccctgcctcggcccaggcggcggcggcggcggggcagccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgcgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgcc