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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg...

Basic information

species Zea mays
transcript GRMZM2G067476_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 1
--------------------------------------------------------------------------CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg
                                                                          |||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||  || || |||  |  | |                                                                         
ATCGACCATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCTCCGCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGgtttcgctctcccgccccaagcctggcgtcgagcgcctcgccgtctccctcgacctctacaaccagggatccgcgtaactact-ctcctctcctcctcctc-------------------------------------------------------------------------

upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 1
CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg----
|||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||  || || |||  |  | || || || ||||||    |  || | | |  | || ||  |    ||    |  |||||| |  | |  |  |    
CGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactact-ctcctctcctcctcctcctcctcctccgatct--ctcctctcctctcctcgt-tgttgcaagggaacttcacttgtctttttcttctcggatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18649160|gb|BM497979.1|BM497979
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|161590160|gb|EY960637.1|EY960637
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA