Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg...

Basic information

species Zea mays
transcript GRMZM2G067476_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.2 (Oryza sativa), 5'ss of exon 1
--------------------------------------------------------------------------CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg
                                                                          |||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||  || || |||  |  | |                                                                         
ATCGACCATGGCGATGGCGCGATCCATCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCTCCGCCTCCGCCGACGCGCCCTTCCTCGTCGCGCACAAGAAGgtttcgctctcccgccccaagcctggcgtcgagcgcctcgccgtctccctcgacctctacaaccagggatccgcgtaactact-ctcctctcctcctcctc-------------------------------------------------------------------------

upper sequence: GRMZM2G067476_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g01307.1 (Oryza sativa), 5'ss of exon 1
CGCCCTTCGTCGTCGCGCACAAGAAAATTTCGCTCTCCCGCCCCAAGCCGGGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccgctgctttcccacagcacccccaccgccgatccggtttgtcgcttgtagtagtctgccgatctggcttgttgcttgtcgtagtttcgtttg----
|||||||| ||||||||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||| |  ||  || || |||  |  | || || || ||||||    |  || | | |  | || ||  |    ||    |  |||||| |  | |  |  |    
CGCCCTTCCTCGTCGCGCACAAGAAGGTTTCGCTCTCCCGCCCCAAGCCTGGCGTCGAGCGCCTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtaactact-ctcctctcctcctcctcctcctcctccgatct--ctcctctcctctcctcgt-tgttgcaagggaacttcacttgtctttttcttctcggatct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18164000|gb|BM333839.1|BM333839
EST:     CCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|17932024|gb|BM268984.1|BM268984
EST:     ACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: ACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18168815|gb|BM338655.1|BM338655
EST:     CCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18161892|gb|BM331731.1|BM331731
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18168234|gb|BM338074.1|BM338074
EST:     GCGTCGAGCGCGTCGCTGTCTCCCTCGACCTATACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|16926595|gb|BM079663.1|BM079663
EST:     CCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: CCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18173140|gb|BM348528.1|BM348528
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|16378806|gb|BI992621.1|BI992621
EST:     CAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: CAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|37391749|gb|CF633118.1|CF633118
EST:     CCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTA
genomic: CCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18649161|gb|BM497980.1|BM497980
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|148973350|gb|EE024440.2|EE024440
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18167604|gb|BM337444.1|BM337444
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18649160|gb|BM497979.1|BM497979
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18174175|gb|BM349563.1|BM349563
EST:     GCGCGTCGCTGTCTCC-TCGAACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GCGCGTCGCTGTCTCCCTCGA-CCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18174386|gb|BM349774.1|BM349774
EST:     AGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: AGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|22819811|gb|BU499901.1|BU499901
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18172051|gb|BM347439.1|BM347439
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|50331163|gb|CO526289.1|CO526289
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|60400336|gb|DN233143.1|DN233143
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|89249775|gb|DY621561.1|DY621561
EST:     GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|161590160|gb|EY960637.1|EY960637
EST:     GGCGTCGAGCGCGTCGCCGTCTCCCTCGACCTCTACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
genomic: GGCGTCGAGCGCGTCGCTGTCTCCCTCGACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACA
EST: gi|110524573|gb|EE028757.1|EE028757
EST:     ACCAGGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGT
genomic: ACCAGGG-ATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGT
EST: gi|18168659|gb|BM338499.1|BM338499
EST:     ACAACCAGGGATCCGC                         GACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: ACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
EST: gi|18163404|gb|BM333243.1|BM333243
EST:     GACCTCTACAACCAGGGATCCGC                         GACTGCATATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT
genomic: GACCTCTACAACCAGGGATCCGCgtgagcaccg ... cctattgcagGACTGCCTATGATGTGTCCATTAATGACGACTCTTGGCCAACAGAAGTGTT