Skip to another splice site:
1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag

Basic information

species Zea mays
transcript GRMZM2G067096_T09
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067096_T09 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 1
----GAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacg-tcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag---------------------------------------
    | ||| ||||||||||  |||||| ||||||||| |||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   | || |  | |   |   |||   |        ||   ||| | || ||  |||  ||                                            
CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcat---tcacagtcatgctgtcctt-tctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149107469|gb|EE189348.2|EE189348
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149070534|gb|EE158937.2|EE158937
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149087495|gb|EE176894.2|EE176894
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148951748|gb|EC897505.2|EC897505
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211313799|gb|FL424569.1|FL424569
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCCTCGGTGCTGCT
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCC-TCGGTGCTGCT
EST: gi|211051340|gb|FL399884.1|FL399884
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTC
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
EST: gi|211030380|gb|FL425615.1|FL425615
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCG-CGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149009521|gb|EE041505.2|EE041505
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211158275|gb|FL406078.1|FL406078
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149107489|gb|EE189370.2|EE189370
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149088058|gb|EE177244.2|EE177244
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148949041|gb|EC894464.2|EC894464
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149058885|gb|EE156905.2|EE156905
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211152015|gb|FL418281.1|FL418281
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTCCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149037762|gb|EE155424.2|EE155424
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149103736|gb|EE289142.2|EE289142
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148982176|gb|EE028202.2|EE028202
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211042825|gb|FL411664.1|FL411664
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
EST: gi|211408156|gb|FL390193.1|FL390193
EST:     CGCAGCCGCACTCGTCCGCCTHTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTC
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
EST: gi|149000000|gb|EE037089.2|EE037089
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148948766|gb|EC894167.2|EC894167
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148943082|gb|EC888134.2|EC888134
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149015526|gb|EE045398.2|EE045398
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211309446|gb|FL411462.1|FL411462
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTG
EST: gi|211516474|gb|FL412107.1|FL412107
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGC-TCGGTGCTGCTGGACCGCGTCG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCG
EST: gi|149108368|gb|EE292706.2|EE292706
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149076464|gb|EE165087.2|EE165087
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211445446|gb|FL381393.1|FL381393
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148966842|gb|EE017949.2|EE017949
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149014471|gb|EE044090.2|EE044090
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149014425|gb|EE044028.2|EE044028
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149079439|gb|EE168416.2|EE168416
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148950434|gb|EC896002.2|EC896002
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149012850|gb|EE042690.2|EE042690
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148936628|gb|EC880752.2|EC880752
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211247176|gb|FL378136.1|FL378136
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211236317|gb|FL399118.1|FL399118
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGT
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGT
EST: gi|149098075|gb|EE184027.2|EE184027
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149071598|gb|EE159991.2|EE159991
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148932883|gb|EE285652.2|EE285652
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211022164|gb|FL381494.1|FL381494
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
EST: gi|148936554|gb|EC880672.2|EC880672
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--AC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211123843|gb|FL373684.1|FL373684
EST:     CGCAGCCGCACTCGTCCGCNTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211256883|gb|FL405700.1|FL405700
EST:     CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACG---                         G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCG
genomic: CGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 32

GAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAGCGCGACGCCGGCCCGAACCAGTCGCTTCGCGGCCTGGGCGCCGTCGAGG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTACgtacgtcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - CGCAGCCG