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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgtcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag

Basic information

species Zea mays
transcript GRMZM2G067096_T08
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067096_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 1
CGAGGAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacg-tcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag---------------------------------------
||||| ||| ||||||||||  |||||| ||||||||| |||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   | || |  | |   |   |||   |        ||   ||| | || ||  |||  ||                                            
CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcat---tcacagtcatgctgtcctt-tctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211051340|gb|FL399884.1|FL399884
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
EST: gi|149071598|gb|EE159991.2|EE159991
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149070534|gb|EE158937.2|EE158937
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149031460|gb|EE286352.2|EE286352
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148943082|gb|EC888134.2|EC888134
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149076464|gb|EE165087.2|EE165087
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149087495|gb|EE176894.2|EE176894
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149037762|gb|EE155424.2|EE155424
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|18659982|gb|BM500624.1|BM500624
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCAAGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTTGGACCGCGTCGGCGGCCAGAGATCNGA
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCT-GGACCGCGTCGGCGGCCAGAGATCGGA
EST: gi|148932883|gb|EE285652.2|EE285652
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148982176|gb|EE028202.2|EE028202
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149012850|gb|EE042690.2|EE042690
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211256883|gb|FL405700.1|FL405700
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCG
EST: gi|148951748|gb|EC897505.2|EC897505
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149000000|gb|EE037089.2|EE037089
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149009521|gb|EE041505.2|EE041505
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211209625|gb|FL397913.1|FL397913
EST:     ACGTCGCAGCCGCACTCGTCCNCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGC
EST: gi|211152015|gb|FL418281.1|FL418281
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTCCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211313799|gb|FL424569.1|FL424569
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCCTCGGTGCTGCT
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCC-TCGGTGCTGCT
EST: gi|149088058|gb|EE177244.2|EE177244
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211445446|gb|FL381393.1|FL381393
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148977356|gb|EE026051.2|EE026051
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148949041|gb|EC894464.2|EC894464
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211408156|gb|FL390193.1|FL390193
EST:     ACGTCGCAGCCGCACTCGTCCGCCTHTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
EST: gi|149108368|gb|EE292706.2|EE292706
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211158275|gb|FL406078.1|FL406078
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211042825|gb|FL411664.1|FL411664
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
EST: gi|211516474|gb|FL412107.1|FL412107
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGC-TCGGTGCTGCTGGACCGCGTCG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCG
EST: gi|211123843|gb|FL373684.1|FL373684
EST:     ACGTCGCAGCCGCACTCGTCCGCNTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211309446|gb|FL411462.1|FL411462
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTG
EST: gi|211022164|gb|FL381494.1|FL381494
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGA
EST: gi|211247176|gb|FL378136.1|FL378136
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211236317|gb|FL399118.1|FL399118
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGT
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGT
EST: gi|149058885|gb|EE156905.2|EE156905
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GTACGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagG---G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATC
EST: gi|148936554|gb|EC880672.2|EC880672
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|211030380|gb|FL425615.1|FL425615
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCG-CGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG