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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgtcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag

Basic information

species Zea mays
transcript GRMZM2G067096_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G067096_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g51550.1 (Oryza sativa), 5'ss of exon 1
CGAGGAGATGGTGTCGTCCATGGTGCGGAAGCTCTACCACGCGGACCCCAACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacg-tcggttcttgctgctgcatgtcttgtgtctgtgaactccatgtcgacgatcgagcgtgcag---------------------------------------
||||| ||| ||||||||||  |||||| ||||||||| |||  ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||   | || |  | |   |   |||   |        ||   ||| | || ||  |||  ||                                            
CGAGGGGATCGTGTCGTCCACCGTGCGGGAGCTCTACCTCGCCAACCCCAACGTCGCCGCCGCGCTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgcgtgctccgcgcgtcgcgtctcat---tcacagtcatgctgtcctt-tctacactcgcacgcttgacacaaccaaggtgttcccttccccgtgacgcgcgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149015526|gb|EE045398.2|EE045398
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148932883|gb|EE285652.2|EE285652
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148943082|gb|EC888134.2|EC888134
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149009521|gb|EE041505.2|EE041505
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148936628|gb|EC880752.2|EC880752
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|18659982|gb|BM500624.1|BM500624
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCAAGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTTGGACCGCGTCGGCGGCCAGAGATCNGA
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCT-GGACCGCGTCGGCGGCCAGAGATCGGA
EST: gi|211408156|gb|FL390193.1|FL390193
EST:     ACGTCGCAGCCGCACTCGTCCGCCTHTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTC
EST: gi|149107489|gb|EE189370.2|EE189370
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148966842|gb|EE017949.2|EE017949
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148948766|gb|EC894167.2|EC894167
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149103736|gb|EE289142.2|EE289142
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149014425|gb|EE044028.2|EE044028
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149037762|gb|EE155424.2|EE155424
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149058885|gb|EE156905.2|EE156905
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GTACGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATC
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagG---G-CTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATC
EST: gi|149108368|gb|EE292706.2|EE292706
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149107469|gb|EE189348.2|EE189348
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTAC                      
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--ACgtacgtacgt ... gagcgtg
EST: gi|149071598|gb|EE159991.2|EE159991
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149079439|gb|EE168416.2|EE168416
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACGTAC                      
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCAT-C-C--ACgtacgtacgt ... gagcgtg
EST: gi|211152015|gb|FL418281.1|FL418281
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTCCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148936554|gb|EC880672.2|EC880672
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149088058|gb|EE177244.2|EE177244
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149070534|gb|EE158937.2|EE158937
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149076464|gb|EE165087.2|EE165087
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|149014471|gb|EE044090.2|EE044090
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148982176|gb|EE028202.2|EE028202
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
EST: gi|148950434|gb|EC896002.2|EC896002
EST:     ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCAC                         GGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG
genomic: ACGTCGCAGCCGCACTCGTCCGCCTCTTCTTCCACGACTGCTTCATCCACgtacgtacgt ... gagcgtgcagGGCTGCGACGCCTCGGTGCTGCTGGACCGCGTCGGCGGCCAGAGATCGGAG