1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
species | Zea mays |
transcript | GRMZM2G067022_T02 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAG GTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATGEST: gi|91870569|gb|EB400953.1|EB400953
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgg ... tcgtccgcagGTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAG GTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATGEST: gi|78111088|gb|DV529485.1|DV529485
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgg ... tcgtccgcagGTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAG GTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATGEST: gi|93014357|gb|EB639877.1|EB639877
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgg ... tcgtccgcagGTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAG GTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgg ... tcgtccgcagGTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC