Sequence
atgc intronic sequence ATGC exonic sequenceCGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G067022_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g37470.3 (Oryza sativa), 5'ss of exon 1
CGCTGAGCAGCAGCGCG-ACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
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-GGCCATGGGCGTCGAGCAGGACGGCAAGTTCAGCATGACGAGCCTCCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgaccaaccacga-acg---acctcgtcatgcctctcgctcacatttcgtttggaattttgcag------------------------------------
upper sequence: GRMZM2G067022_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S90_46V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCTGAGCA--GCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgct--cacgcggtggcgtgtttcggcgttcgtccgcag
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GGATGGCCCTTACGACGTGTCCATGA-GTGGGCAG-ATGAAGCGCCTGCTTTGGCATGGTGGCTCCGTCTGGGATGCCTGGTTCAGCGCCGCCTCCAACCAGgtcattccattcac--catgctcagctcgaatgcattctcactcccatttccaacgacacactttgcagtagtatccaacgagat-tgcttgcatccgatttc--
upper sequence: GRMZM2G067022_T02 (Zea mays), 5'ss of exon 1
lower sequence: PP1S211_67V6.1 (Physcomitrella patens), 5'ss of exon 1
CGCTGAGCAGCAGCGCGACGGC--GGCAAG-GTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctg--cggccggtgtgctagag---taacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
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---AGAGGGCCCTCACGATGTCTCGATGAGTGGAAAGATGAAGCGGCTCCTGTGGCATGGCGGCTCCGTCTGGGATGCCTGGTTCAGCGCCGCGTCCAACCAGgtgatcattcttccggc-cagcagcagatcgaaaaatggattatagctctactctcacctttaaaccaatgc-cttatgatg-ggcggctgatgggaattctc-----
upper sequence: GRMZM2G067022_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ18760 (Selaginella moellendorffii), 5'ss of exon 1
CGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
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AGATGGGCTTGTGGATAACTCCATGCGAGCTCTCGCCAAGAAGCTCCTCTGGCACGGTGGATCCGTCTACGATGCTTGGTTTAGCTGCGCCTCCAACCAGgtgagtagtgagagctca-aaagaccactcctttcttgctcttcttgcatagcttccccgcctttgcttcgattcctt--ccactcgcagtataaaaaccaaa
upper sequence: GRMZM2G067022_T02 (Zea mays), 5'ss of exon 1
lower sequence: EFJ36050 (Selaginella moellendorffii), 5'ss of exon 1
CGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcac---gggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
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AGATGGGCTTGTGGATAACTCCATGCGAGCTCTCGCCAAGAAGTTCCTCTGGCACGGTGGATCCGTCTACGATGCTTGGTTTAGCTGCGCCTCCAACCAGgtgagtagtgagagctcaaagaacactcctttcttgctcttcttgcatagcttccccgcgtttgcttcgattccttccagtcgca-gtataaaaaccaaag-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71772740|gb|DR970666.1|DR970666EST: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAG GTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
genomic: GGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgg ... tcgtccgcagGTGGCGCAGGTGCTGCTGACGCTGCCGTACTCGTTCTCGCAGCTGGGCATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGCTGAGCAGCAGCGCGACGGCGGCAAGGTCAGCATGAAGAGCCTGCTGTGGCACGGCGGCTCCGTCTGGGACGCCTGGTTCAGCTGCGCCTCCAACCAGgtacgcacgggcacggcacgctagctgcggccggtgtgctagagtaacgtcgcatggaggatcgcgcgctcacgcggtggcgtgtttcggcgttcgtccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC