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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACAGACGGCGGTGGCATTGCGGCCACGGCGCAGCTGGGCGCCATGATCGTCGCGTGGTACCTGCTCAACATCTACTTCAACATCTACAACAAGCAGgtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctccactcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcag

Basic information

species Zea mays
transcript GRMZM2G066413_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G066413_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g07730.1 (Oryza sativa), 5'ss of exon 1
--GACGACAGACGGCGGTGGCATTGCGGCCACGGCGCAGCTGGGCGCCATGATCGTCGCGTGGTACCTGCTCAACATCTACTTCAACATCTACAACAAGCAGgtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctccactcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcag
  | ||  |||  | || |   | ||||  |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||         ||   | || ||  | |        ||||||  ||| | |||    |   |||        ||  | |    | |                
TGGGCGGGAGA--GAGGCGCACTCGCGGAGACGGCGCAGCTGGGCGCCATGATCGTGGCGTGGTACCTCCTCAACATCTACTTCAACATCTACAACAAGCAGgtctt--------cctcccccctcaagaaccttctccttcctca--tcctcgccatctcttaacccaatcagccatggagaatctcag----------------

upper sequence: GRMZM2G066413_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ27053 (Selaginella moellendorffii), 5'ss of exon 1
GACGACAGACGGCGGTGGCATTGCGGCCACGGCGCAGCTGGGCGCCATGATCGTCGCGTGGTACCTGCTCAACATCTACTTCAACATCTACAACAAGCAGgtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctccactcttctccccccctgatgatcaacaccaaccgtcgtcccccgttgcag
|     |  |||| | |  ||   |  |||    ||||||||  |  |  |||    |||||||||  |||||||||||||||||||||| ||||||||||  | |        ||||  |       |||| |      ||  ||||  |||   | ||||||   | || |  |    | | |    | |      |  |||
GCAAGAATCCGGCAGCGCGATGATGCGCACACTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttcttctcgttttct----tttctccaccttagctaggatcttctcttgttttctccatgcatgctactttctaactag-aacttgtgatttctcag

upper sequence: GRMZM2G066413_T01 (Zea mays), 5'ss of exon 1
lower sequence: EFJ05868 (Selaginella moellendorffii), 5'ss of exon 1
GACGACAGACGGCGGTGGCATTGCGGCCACGGCGCAGCTGGGCGCCATGATCGTCGCGTGGTACCTGCTCAACATCTACTTCAACATCTACAACAAGCAGgtctggccggcggccgttcaccgcagcatctcaagagatcctcagatcccctccactcttctccccccctgatgatcaaca-ccaaccgtcgtcccccgttgcag
|     |  |||| | |  ||   |  ||||   ||||||||  |  |  |||    |||||||||  |||||||||||||||||||||| ||||||||||  | |        ||||  |       |||| |      ||  ||||   ||   | ||||||   | || |  |    | | |    |  |  | |       
GCAAGAATCCGGCAGCGCGATGATGCGCACGCTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttcttctcgttttct----tttctccaccatagctaggatcttttcttgttttctccatgcatgctactttctaactagaacttatttctcag-----