1 5' 3' | 2 5' 3' | 3 5' 3' |
GCCTGCGTGTGCTGCTCGAGGAAGACGGCGCCGAGGAGGAGGAAGAGACCTCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcacgcatccacttttgaatcttgatgagaggggaggcaacaaatctgagaagtgactagactttcttggcgttaatggacacccacccaaatggcatcgcag
species | Zea mays |
transcript | GRMZM2G065214_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTEST: gi|148961343|gb|EE012072.2|EE012072
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACT
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGCCGGCGTGCAAAG CCACAGGTAATAGCCCCACGTACTACCCEST: gi|149058835|gb|EE156855.2|EE156855
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTACCC
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTAEST: gi|149112997|gb|EE191483.2|EE191483
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTA
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTACCEST: gi|71428628|gb|DR809678.1|DR809678
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTACC
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTACCCGAACEST: gi|76289987|gb|DV029555.1|DV029555
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTACCCGAAC
EST: CACA-TCCCATGCATTACTACGNCG-ACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTACCCGAACGGGCCGCAGCCGCAGTGGCEST: gi|101396443|gb|EB820148.1|EB820148
genomic: CACAATCCCATGCATTACTACG-CGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTACCCGAACGGGCCGCAGCCGCAGTGGC
EST: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAG CCACAGGTAATAGCAGCACGTACTACCCGAACGGGCCGCAGCCGCAGTGGC
genomic: TCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcac ... ggcatcgcagCCACAGGTAATAGCAGCACGTACTACCCGAACGGGCCGCAGCCGCAGTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGCGTGTGCTGCTCGAGGAAGACGGCGCCGAGGAGGAGGAAGAGACCTCACAATCCCATGCATTACTACGCGGACTTCCCGTCGTCGGCGTGCAAAGgtaaaggcacgcatccacttttgaatcttgatgagaggggaggcaacaaatctgagaagtgactagactttcttggcgttaatggacacccacccaaatggcatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG