Sequence
atgc intronic sequence ATGC exonic sequenceTCACGCTTGATTGCTTGATGCTGATCTGTTGTCTATTTTGTAGACTGTCCAAGAAACCGTCAATGTGGGCACAGAAACTGCAGCTGCTCTGAAAGCACAGgtacgtttcttttcttatttccagaaggaatccattgctttattatgttgtccaatcaggaaagctaaaggcaattttgggctattccttcttcatcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G065105_T05 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g50120.2 (Oryza sativa), 5'ss of exon 7
TCACGCTTGATTGCTTGATGCTGATCTGTTGTCTATTTTGTAGACTGTCCAAGAAACCGTCAATGTGGGCACAGAAACTGCAGCTGCTCTGAAAGCACAGgtacgtttcttttcttatttccagaaggaatccattgctttattatgttgtccaatcaggaaagctaaaggcaattttgggctattccttcttcatcag
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-------------------------------------------ACCGTCCAAGAGACCATCAATGTAGGTACAGAAACTGCAGCTGCTCTCAAATCACAGgcaggatttctttgttcttctcaaa---------ccagccaatcatgctgtgtaacctggatataccagagctaacttcggttatttcttattgaccagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|6194885|gb|AW146989.1|AW146989EST: AAGAAACCGTCAATGTGGGCACAGAAACTGCAGCTGCTCTGAAAGCACAG ACAGAACAAATGAGCAGAGTTGTTAATGAGTTGGATTCCATCCATTTCTCC
genomic: AAGAAACCGTCAATGTGGGCACAGAAACTGCAGCTGCTCTGAAAGCACAGgtacgtttct ... tcttcatcagACAGAACAAATGAGCAGAGTTGTTAATGAGTTGGATTCCATCCATTTCTCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCACGCTTGATTGCTTGATGCTGATCTGTTGTCTATTTTGTAGACTGTCCAAGAAACCGTCAATGTGGGCACAGAAACTGCAGCTGCTCTGAAAGCACAGgtacgtttcttttcttatttccagaaggaatccattgctttattatgttgtccaatcaggaaagctaaaggcaattttgggctattccttcttcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT