1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTCGACTGCCGGAGGGGGAGGAGGACATGGATTTGGCGTCGGTCAACGAGGAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgcatcacattcggcttgctgcgacttaggttgcttgtagcttgcttgcgtcgcccacgcatggtcgccagatatctcaactttcttgctgcg...
species | Zea mays |
transcript | GRMZM2G065105_T04 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211163879|gb|FL231538.1|FL231538
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211162277|gb|FL231520.1|FL231520
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211162284|gb|FL231527.1|FL231527
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|32910504|gb|CF015316.1|CF015316
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAGEST: gi|211357114|gb|FL231560.1|FL231560
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
EST: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCA AAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
genomic: GAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgc ... ttgtctgcagAAATGGGTTCCAGAAGCTGGAGAAGATCAAGGATGCCAACCGCCGCAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGACTGCCGGAGGGGGAGGAGGACATGGATTTGGCGTCGGTCAACGAGGAGCTGGCCGAGATCGACGGGCAGATCGGCGATATCCTCCGCGTATTGCAgtaagctcgcatcacattcggcttgctgcgacttaggttgcttgtagcttgcttgcgtcgcccacgcatggtcgccagatatctcaactttcttgctgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT