Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGATATGCCGATGAGGCCTGCGCGGCCGGGCCCGCCGATGCAGCACCGTGGTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttcttacaccccctcccccccttgctcccggcgtcaggcttctactgtggaatgtgaatcccgcgatgctccttgtggtggattgcgctctcaca...

Basic information

species Zea mays
transcript GRMZM2G064988_T05
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064988_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g02960.4 (Oryza sativa), 5'ss of exon 2
CGATATGCCGATGAGGCCTGCGCGGCCGGGCCCGCCGATGCAGCACCGTGGTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttcttacaccccctcccccccttgctcccggcgtcaggcttctactgtggaatgtgaa---tcccgcgatgct----ccttgtggtggattgcgctctcaca----------------------------------------------------------
||| |||||||||||||||| |||||| || |||||||||||| |||| || || || || ||||| |||   |||  ||||||  |||| ||||||||||| ||  ||    | || | |||||||  |   ||  |    |   |  | || || || | |    |  ||||| |     | ||||| |  | | || |    |                                                           
CGAGATGCCGATGAGGCCTGTGCGGCCAGGGCCGCCGATGCAGTACCGGGGGCCTCCTCCCATGGCTCGCGCGCGCGTCGAACCCGTCGATCGCGAGAAGgtgaggcctc---ctccgtgcccccctcccaatcgatgcgctggaacagcagtagattgcgtactaccttgcgattcgacggcattgtgttccagttcgattctgctaggttaaccatgttgattgatttgtttacttactgttcactatcgggttcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211126711|gb|FL428261.1|FL428261
EST:     GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG                         ACCTGTCCTCTAGCTGCTCAGGGTTTTCACAAGG
genomic: GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... ttgtgtgcagACCTGTCCTCT-GCTGCTCAGGGTTTTCACAAGG
EST: gi|94479367|gb|EB708325.1|EB708325
EST:     GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG                         ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG
genomic: GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... ttgtgtgcagACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG
EST: gi|211045986|gb|FL421700.1|FL421700
EST:     GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAG                         ACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG
genomic: GTCCGCCCCCGATGGCGCGCCTCCGCCCCGAACCAATCGACCGCGAGAAGgtcagttctt ... ttgtgtgcagACCTGTCCTCTGCTGCTCAGGGTTTTCACAAGG