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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATCCTCATGCTCTTCTTCGCCTGGCTTCTCGTCCTCTCCGTCTCTGGTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtccccaccctctatctcgtccccagtccctcgcccttctgattttgcgcatgtctatggatcgcttccgtccactgtatccctagatttggttgt...

Basic information

species Zea mays
transcript GRMZM2G064898_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064898_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os07g26940.3 (Oryza sativa), 5'ss of exon 1
CTACATCCTCATGCTCTTCTTCGCCTGGCTTCTCGTCCTCTCCGTCTCTGGTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtccccaccctctatctcgtcc-ccagtccctcgcccttctgattttgcgcatgtctatggatcgcttccgtccactgtatccctagatttggttgt--
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CTACATCCTCCTCCTCTTCTTCGCCTGGCTGCTCGTCCTCTCCGTCTCCGCCTGCTCCCCCGGGATCGCGTGGACCGTCGTCAACCTCGCCCACTTCGCCgtacgtcccgcctcgccccccgattcattcatccatccatccattcattgacggcgagtttgctcctt-ctttcattagtccgatccgtt--cttgattagcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211356382|gb|FL426368.1|FL426368
EST:     TTGCTCCCCGGGGGCAGCCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: TTGCTCCCCGGGGGCAGCC-TGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|211274084|gb|FL097598.1|FL097598
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|211274087|gb|FL097601.1|FL097601
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|211272284|gb|FL097591.1|FL097591
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|211274085|gb|FL097599.1|FL097599
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|211274086|gb|FL097600.1|FL097600
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
EST: gi|14243683|gb|BG841365.2|BG841365
EST:     GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCC                         ATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT
genomic: GTTGCTCCCCGGGGGCAGCCTGGACCGTCGTCAACCTCGCGCACTTCGCCgtgagtcccc ... ctattttcagATCACTTACCACTTCTTCCATTGGAAGAAAGGAACCCCTTTTGCTGCTGAT