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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGAGAGTATGGCCCTTTTAAGGAACCAGCGATTCGTAATTACACTGGGCAAATTCTTGCTGGTCTTGCCTACTTGCATCGGCGGAACACTGTCCACAGgttgttttgttgtctaaaactgtgttctcattccatacgtatagtcatatagcacagaatggaataatcatatcatacttattttcttggcag

Basic information

species Zea mays
transcript GRMZM2G064773_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G064773_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os04g35700.1 (Oryza sativa), 5'ss of exon 5
TGAGAGAGTATGGCCCTTTTAAGGAACCAGCGATTCGTAATTACACTGGGCAAATTCTTGCTGGTCTTGCCTACTTGCATCGGCGGAACACTGTCCACAGgttgttttg-ttgtctaaaactgtgttctcattccatacgtatagtcatatagcacagaatggaataatcatatcatacttattttcttggcag
| ||||||||||| |||||||||||||| | ||| |||||||||||||| ||||||||  |||||||||||||||||||| || |||||||||||||||||| ||   | || || | |  ||| ||  |||||| |     | ||  || |  |   |||    ||| ||  |||| ||  || |||| ||||
TTAGAGAGTATGGTCCTTTTAAGGAACCTGTGATCCGTAATTACACTGGACAAATTCTCTCTGGTCTTGCCTACTTGCATGGGAGGAACACTGTCCACAGgtagtacagattatccacagttgt-tttacattcctt-----tggtagtaaaaga---aataccttaaccacttcatcctgtttctcttcgcag