1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCGCCGGGGCCCCTGCGGCGTCCGCCTCCTCTGCAGCCCGCGCCGCCCCGCTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatctcacatccccggatctcgattccctggcggcgtccagcgctgatcgagtgccggtggtcgcttgggtgtgctgcag
species | Zea mays |
transcript | GRMZM2G064753_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|60341353|gb|DN208326.1|DN208326
genomic: GCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: CCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|211158395|gb|FK955819.1|FK955819
genomic: CCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: CTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCGTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGNCTCEST: gi|211161585|gb|FK955846.1|FK955846
genomic: CTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTC-TCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTC
EST: GCTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|211282259|gb|FL038861.1|FL038861
genomic: GCTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: GCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|44901526|gb|CK828071.1|CK828071
genomic: GCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: TCCGCCGCACCAGCCCGCTCCTCTCA- CGTTCAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|101401431|gb|EB822393.1|EB822393
genomic: TCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: CGCTTTCCGCCGCACCAGCCCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCGEST: gi|60398986|gb|DN231802.1|DN231802
genomic: CGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
EST: CCGCTCCTCTCAG GGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
genomic: CCGCTCCTCTCAGgtaaggatct ... tgtgctgcagGGGACAAGCCGGCGAGTGTGGAGGACGTCATGCCCATCGCCACGGGGCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCGCCGGGGCCCCTGCGGCGTCCGCCTCCTCTGCAGCCCGCGCCGCCCCGCTCTCCTCGGCGGCCGCCGCTTTCCGCCGCACCAGCCCGCTCCTCTCAGgtaaggatctcacatccccggatctcgattccctggcggcgtccagcgctgatcgagtgccggtggtcgcttgggtgtgctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC