1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCTTCCGCGAGGTGGGCAACGCCTTCCTCCTCTCCGGCGGCAGCGAGGGCATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaactctctcggccccacgcccgcctccctcctttcctggcttacgttggctggagcctggaggacgcacagtgtttggccgtagtttctagaag...
species | Zea mays |
transcript | GRMZM2G064366_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATTAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148971673|gb|EE022397.2|EE022397
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470716|gb|FL239790.1|FL239790
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148980619|gb|EE027253.2|EE027253
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148990959|gb|EE032389.2|EE032389
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148967310|gb|EE018516.2|EE018516
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470715|gb|FL239789.1|FL239789
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTAGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470718|gb|FL239792.1|FL239792
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTAGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148960353|gb|EE153612.2|EE153612
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|149112570|gb|EE295432.2|EE295432
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|89247403|gb|DY619189.1|DY619189
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148973007|gb|EE024054.2|EE024054
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|149077441|gb|EE166131.2|EE166131
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148959136|gb|EC905268.2|EC905268
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470719|gb|FL239793.1|FL239793
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTAGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470717|gb|FL239791.1|FL239791
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|148986456|gb|EE030198.2|EE030198
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGCEST: gi|211470720|gb|FL239794.1|FL239794
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
EST: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAA GTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
genomic: ATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaact ... ttactcacagGTTTGTGAATGTTACATTTTGGAGAACCCCAGAAGCTGCGGAATCACACGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTTCCGCGAGGTGGGCAACGCCTTCCTCCTCTCCGGCGGCAGCGAGGGCATCGTCGCCGACGGGGCAGACCCCGCCGCCCCCGCATCCTCCTTCATCAAgtgaggaactctctcggccccacgcccgcctccctcctttcctggcttacgttggctggagcctggaggacgcacagtgtttggccgtagtttctagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cggcccc
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