Sequence
atgc intronic sequence ATGC exonic sequenceCAAATGGCGGAGGCGGAGGCGACGGTGGGGCGACTGATGCTGTACTCGTACTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAGgtgcgtgctgttcggccaccgctgaataagactcgggccattgtctattggacgcattgatgcattcgtttcgattgattcgatgtgtgggttgttttttttctgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G064255_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g35590.3 (Oryza sativa), 5'ss of exon 1
CAAATGGCGGAGGCGGAGGCGACGGTGGGGCGACTGATGCTGTACTCGTACTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAGgtgcgtgctgttcggccaccgctgaataagactcgggccattgtc-tattggacgcattgatg-cattcgtttcgattgattcgatgtgtgggttgttttttttc-tgcag--------------------------
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GAGGCGGCGGGGGCGGCGGTGGCGCCGGCGAAGCTGGGTCTGTACTCGTACTGGCGGAGCTCGTGCTCGCACCGCGTCCGCATCGCCCTCAACCTCAAAGgtacgttgtgcccg--cgccgcgcgattgccttcctctcgtcgtcatcttctatgcgtggttggctcatggccgggcagagtgagtgaacctggtgcgtgcgtgcgtgcgggtgattttgatgtctgtctcctgcag
upper sequence: GRMZM2G064255_T02 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA17G00700.2 (Glycine max), 5'ss of exon 2
CAAATGGCGGAGGCGGAGGCGACGGTGGGGCGACTGATGCTGTACTCGTACTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAGgtgcgtgctgttcggccaccgctgaataagactcgggccattgtctattggacgcattgatgcattcgtttcgattgattcgatgtgtgggttgttttttttctgcag
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--------GCAAGCGCAAGTGTTGGTAAAG-AACTGACGCTGTATTCGTATTGGAGGAGCTCTTGTTCCCACCGAGTCCGAATCGCTCTCAACCTCAAAGgtactctcctttca-ctacactccctttcctttttttcccttctctcat---ctcactt-tccactcacct---ttgcatacacatacag------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211155301|gb|FL418647.1|FL418647EST: CTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAG GTGTGGATTACGAGTACAAGGCGGTGAACCTTCTCAAGGGCGAGCAGTCTG
genomic: CTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAGgtgcgtgctg ... ttttctgcagGTGTGGATTACGAGTACAAGGCGGTGAACCTTCTCAAGGGCGAGCAGTCTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CAAATGGCGGAGGCGGAGGCGACGGTGGGGCGACTGATGCTGTACTCGTACTGGCGCAGCTCGTGCTCCCACCGTGCCCGCATCGCTCTCAATCTCAAAGgtgcgtgctgttcggccaccgctgaataagactcgggccattgtctattggacgcattgatgcattcgtttcgattgattcgatgtgtgggttgttttttttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC