1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AGCCTTGTACTGACGGCGGACCCCAAGCCCAGGCTACGGTGGACGGCCGACCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctaccctctcctccctctccaatctcgcaactttggcggtccttggttttggcattggaatagagagcattgcgtgcttgttgccttgttggtta...
species | Zea mays |
transcript | GRMZM2G064197_T03 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|50333124|gb|CO528250.1|CO528250
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|211244393|gb|FL238844.1|FL238844
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|101397100|gb|EB820474.1|EB820474
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGTCA-CACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTEST: gi|87156993|gb|DY401782.1|DY401782
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAG-CAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACT
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|22473367|gb|BU037847.1|BU037847
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|26558692|gb|CA830927.1|CA830927
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|76918384|gb|DV167269.1|DV167269
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|76292002|gb|DV031570.1|DV031570
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|91051798|gb|EB162216.1|EB162216
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|74233858|gb|DT641772.1|DT641772
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|71436515|gb|DR817565.1|DR817565
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|88755721|gb|DY539862.1|DY539862
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTCEST: gi|74232735|gb|DT640649.1|DT640649
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
EST: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGA AAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
genomic: CCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctacc ... aattttgcagAAGCAACACCAAAAACTATCTTAAGGACGATGGGTGTCAAGGGTCTTACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTTGTACTGACGGCGGACCCCAAGCCCAGGCTACGGTGGACGGCCGACCTCCACGAGCGTTTCGTCGACGCCGTGGCCCAGCTCGGCGGACCCGAGAgtgagctaccctctcctccctctccaatctcgcaactttggcggtccttggttttggcattggaatagagagcattgcgtgcttgttgccttgttggtta
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