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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCCTTTCCTTGTTGGTAAGAGCAAGGCGAGACGTAACGTAATCCGGCCATGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcggtggcgctttgtccttcacggccggtcgtgttgcgtgtgggctgtcgtgctgatgagccttttttttttctcccccgcccgactcccgtgctgttcgtacgtgttgccag

Basic information

species Zea mays
transcript GRMZM2G063909_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g33240.1 (Oryza sativa), 5'ss of exon 2
TTCCTTTCCTTGTTGGTAAGAGCAAGGCGAGACGTAACGTAATCCGGCCATGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcggtggcgctttgtc----cttcacggccggtcgtgt-tgcgtgtgggctgtcgtgctgatgagccttttttttttctcccccgcccgactcccgtgctgttcgtacgtgttgccag
                                |    |   |  |||| |||||||||||||||||||| |||||||| |||||  | |||||||||||||||||||| ||||   | |  ||     | || | |   |  | | ||| | || | ||| | |||||    || |||  |  | |  |  ||| |                             
-----------------------------GTCCACCCCTGCAGGCGGCGATGGCGTTCTTCCGGGGCCTGACCGCGGTTTCGAGGATTCGATCCCGCATGgtgagtagtggtgatccatcatcgatcgtccatgtcaatttttttgtgcatttgtggtgtggcgctgaaattccgtttgctcgtgttgct-gccag-----------------------------

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os11g33240.2 (Oryza sativa), 5'ss of exon 2
TTCCTTTCCTTGTTGGTAAGAGCAAGGCGAGACGTAACGTAATCCGGCCATGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcggtggcgctttgtcc----ttcacggccggtcgtgt-tgcgtgtgggctgtcgtgctgatgagccttttttttttctcccccgcccgactcccgtgctgttcgtacgtgttgccag
                                            |||| |||||||||||||||||||| |||||||| |||||  | |||||||||||||||||||| ||||   | |  ||     | || | |   |  | | ||| | || | ||| | |||||    || |||  |  | |  |  ||| |                             
-------------------------------------------GCGGCGATGGCGTTCTTCCGGGGCCTGACCGCGGTTTCGAGGATTCGATCCCGCATGgtgagtagtggtgatccatcatcgatcgtccatgtcaatttttttgtgcatttgtggtgtggcgctgaaattccgtttgctcgtgttgct-gccag-----------------------------

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10070.1 (Oryza sativa), 5'ss of exon 2
TTCCTTTCCTTGTTGGTAAGAGCAAGGCGAGACGTAACGTAATCCGGCCATGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcggtggcgctttgtccttcacggccggtcgtgttgcgtgtgggctgtcgtgc--tgatgagccttttttttttctcccccgcccgactcccgtgctgttcgtacgtgttgccag
                    |||  | |  |  |   |||  ||||||||||||||||||| ||||||| |||||||| ||||| || ||||||||| |||||||         |   ||| | | |        | | | ||||| ||   |   ||||  |||  |    ||  ||  | |     | | |                             
-------------------CAGCTTGCCCTGTAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatc-caacatcttg-catgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag-----------------------------

upper sequence: GRMZM2G063909_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g10070.2 (Oryza sativa), 5'ss of exon 2
TTCCTTTCCTTGTTGGTAAGAGCAAGGCGAGACGTAACGTAATCCGGCCATGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcggtggcgctttgtccttcacggccggtcgtgttgcgtgtgggctgtcgtgc--tgatgagccttttttttttctcccccgcccgactcccgtgctgttcgtacgtgttgccag
                      |  | |  |  |   |||  ||||||||||||||||||| ||||||| |||||||| ||||| || ||||||||| |||||||         |   ||| | | |        | | | ||||| ||   |   ||||  |||  |    ||  ||  | |     | | |                             
----------------------CTTGCCCTGTAGCCGCGTGCTCCGGCCATGGCGTTCTTCAGGGGCCTGACCGCGGTGTCGAGGCTTCGATCCCGCGTGgtgagccatc-caacatcttg-catgcctattttctggcgatgcgtttgcatttatgtgcgctgaaaaattgttcgttgctttgtgttgtcag-----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076904|gb|DV505338.1|DV505338
EST:     TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|4609695|gb|AI600534.1|AI600534
EST:     GAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCTTATGCAGAGC
genomic: GAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|6526999|gb|AW216224.1|AW216224
EST:     GTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCACAGC
genomic: GTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|71303469|gb|DR787844.1|DR787844
EST:     TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|148965958|gb|EE016876.2|EE016876
EST:     TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|211161741|gb|FL193319.1|FL193319
EST:     TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCACAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
EST: gi|78088374|gb|DV516767.1|DV516767
EST:     TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATG                         GCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC
genomic: TGGCGTTCTTCCGGGGCCTCACCGCGGTCTCGAGACTGCGATCCCGCATGgtgagtagcg ... gtgttgccagGCGCAGGAGGCCACCACGCTGGGTGGTGTGAGATGGCTGCAGATGCAGAGC