ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq

Sequence

atgc intronic sequence ATGC exonic sequence

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagcctcacgcatttccagcctcctcctctctgtccttttggtttgtcgatgcttcctgacgctgtagttgcttcggtggtgcgcgcag

Basic information

species	Zea mays
transcript	GRMZM2G063864_T01
intron #	1
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G063864_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os02g35600.1 (Oryza sativa), 5'ss of exon 1

GGAGGCGCTGGTG-CGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgt---cagctagcctcacgcatttccagcctcctcctctctgtccttttggtttgtcgatgcttcctgac--gctgtagttgcttcggtggtgc-gcgcag
 | ||||  || | || |||||||| || |||| ||  | ||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |||    ||||  | ||     | |   |  | ||| |  |||     ||| ||  | |||  |    ||   |||||  ||  ||  |||  |  | ||||
-GCGGCGGGGGCGGCGGTGCACCACAACGCGCGGTCCGCGGAGGACGTCTTCCGCGACTTCCGCGCGCGCCGCGCGGGCATCGTCAAGGCGCTCACCACCGgtgggtagctctcttcggtgttgtttgggatgctctttgctgattgattgattgattgat-ttgatggatttgctgttcttttttttgtgtggttgtgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211089671|gb|FL143709.1|FL143709

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|5567021|gb|AI881932.1|AI881932

EST:     CCGGGGGTGCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211541755|gb|FL143681.1|FL143681

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|28909913|gb|CB331162.1|CB331162

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148956927|gb|EC902857.2|EC902857

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|31360935|gb|CD445292.1|CD445292

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211541758|gb|FL143684.1|FL143684

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148973532|gb|EE024632.2|EE024632

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|67015174|gb|CO443923.1|CO443923

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|31441001|gb|CD510432.1|CD510432

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211273111|gb|FL373250.1|FL373250

EST:     CCGCGATTTCCGCGCGCG-CGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|91056115|gb|EB166533.1|EB166533

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538738|gb|FL143667.1|FL143667

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|30705614|gb|CD058845.1|CD058845

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148943443|gb|EC888502.2|EC888502

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087221|gb|FL143694.1|FL143694

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|22472296|gb|BU036776.1|BU036776

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|21432175|gb|BQ547665.1|BQ547665

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|28909531|gb|CB330977.1|CB330977

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|74233488|gb|DT641402.1|DT641402

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|37421141|gb|CF648268.1|CF648268

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087222|gb|FL143695.1|FL143695

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211405597|gb|FL390184.1|FL390184

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148942470|gb|EC887488.2|EC887488

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211488746|gb|FL429925.1|FL429925

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087220|gb|FL143693.1|FL143693

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|26558205|gb|CA830440.1|CA830440

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|31441082|gb|CD510513.1|CD510513

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|149081993|gb|EE171161.2|EE171161

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|26558541|gb|CA830776.1|CA830776

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089669|gb|FL143707.1|FL143707

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|40335649|gb|CK369719.1|CK369719

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCNAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089673|gb|FL143711.1|FL143711

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|22472098|gb|BU036578.1|BU036578

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|22133724|gb|BQ833869.1|BQ833869

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|87156313|gb|DY401102.1|DY401102

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|60343509|gb|DN210482.1|DN210482

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|67022293|gb|CO451042.1|CO451042

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|93013611|gb|EB639131.1|EB639131

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|20802891|gb|BQ293926.1|BQ293926

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCG-CAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089667|gb|FL143705.1|FL143705

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538741|gb|FL143670.1|FL143670

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089668|gb|FL143706.1|FL143706

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089672|gb|FL143710.1|FL143710

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148963054|gb|EE014007.2|EE014007

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087218|gb|FL143691.1|FL143691

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGT-GAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538739|gb|FL143668.1|FL143668

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|71757175|gb|DR955112.1|DR955112

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|148966200|gb|EE017149.2|EE017149

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|76019816|gb|DT946986.1|DT946986

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|50337566|gb|CO532692.1|CO532692

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087228|gb|FL143701.1|FL143701

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|23357493|gb|BU645142.1|BU645142

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538744|gb|FL143673.1|FL143673

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087231|gb|FL143704.1|FL143704

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|91874786|gb|EB404743.1|EB404743

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538740|gb|FL143669.1|FL143669

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211541757|gb|FL143683.1|FL143683

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211448345|gb|FL416386.1|FL416386

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|213174383|gb|FM184210.1|FM184210

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211541760|gb|FL143686.1|FL143686

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|101395826|gb|EB819840.1|EB819840

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538737|gb|FL143666.1|FL143666

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|91867783|gb|EB399794.1|EB399794

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087225|gb|FL143698.1|FL143698

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211538743|gb|FL143672.1|FL143672

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211541762|gb|FL143688.1|FL143688

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089679|gb|FL143717.1|FL143717

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|21809488|gb|BQ667806.1|BQ667806

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211087229|gb|FL143702.1|FL143702

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|30087500|gb|CB885706.1|CB885706

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|26456376|gb|CA827959.1|CA827959

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

EST: gi|211089676|gb|FL143714.1|FL143714

EST:     CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGG                         ATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG
genomic: CCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 1188

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

Block sizes: 45 (upstream exon), 47 (downstream exon)
Score: 314

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

Block sizes: 49 (upstream exon), 45 (downstream exon)
Score: 268

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

Block sizes: 49 (upstream exon), 44 (downstream exon)
Score: 230

GGAGGCGCTGGTGCGCTGCACCACCACACGCGCTCACCCGAGGACGTCTTCCGCGATTTCCGCGCGCGCCGAGCCGGCATCGTCAAGGCGCTCACCACGGgtcagctagc ... gtgcgcgcagATGTGGAGAAGTTCTATCAGCAGTGCGATCCAG

Data associated with selected splice site

Sequence

Basic information

Orthologous splice sites

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

RNA-Seq data