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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGATTATCAGAAGGAGACACCCTCATCGTTCAGTTTATCCCCACGGCTATCAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAGgtagactgttctttttcattaatcaatgttttgaagatgataagtatacatctctggatactaattatttatttctgttgcag

Basic information

species Zea mays
transcript GRMZM2G063775_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os09g28610.1 (Oryza sativa), 5'ss of exon 11
AGATTATCAGAAGGAGACACCCTCATCGTTCAGTTTATCCCCACGGCTATCAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAGgtagactgttctttttcattaatcaa--------tgttttgaagatgataagtatacatctctggatactaattatttatttctgttgcag
 || ||||||||||| |  || ||||| || ||||| ||||| ||  |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||   | ||   ||  || || ||        |||       |||  |  |  | | || ||  |||||| ||||| |||    |||||
TGACTATCAGAAGGAAAACCCTTCATCCTTTAGTTTGTCCCCGCGTATATCAATATTTCCCCAATTTGTTTTTAATTTGAGGCGTTCTCAGTTTGTTCAGgtagggagctcgcctttgttcattaagaaaagaatgtgacatgtatgggagattcatacctttgcttactaaatatttgttttctatgcag

upper sequence: GRMZM2G063775_T02 (Zea mays), 5'ss of exon 1
lower sequence: Vv15s0045g00540.t01 (Vitis vinifera), 5'ss of exon 11
AGATTATCAGAAGGAGACACCCTCATCGTTCAGTTTATCCCCACGGCTATCAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAGgta-gactgttcttt--ttcattaatcaatgttttgaagatgataagtatacatctctggatactaattatttatttctgttgcag----------------------------------------
|||||| || ||||| |  || || || ||||| ||||| ||| |  | |||||||||||||| ||||||||| ||||| | |||||||||||||||||||||  ||||    ||  || || | || ||  |||| |  | ||||   ||  |   ||   | |||||| |     |   |                                            
AGATTACCAAAAGGACAACCCATCTTCTTTCAGCTTATCTCCAAGATTTTCAATATTTCCCCAGTTTATATTTCATTTGCGACGTTCTCAGTTTGTTCAGgtataactgactattggtttataattctat-ctttgcatcttataatcgtagtttgatgatgattaattactctcgccccctcttatcttctctagatttatctctggcaattctttttgtcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211191892|gb|FL043211.1|FL043211
EST:     CAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAG                         GTTTTTAATAACAGTCCTGATGAAACTGCGTATTTTAGGATGATGTTGGAC
genomic: CAATATTTCCCCAATTTATATTTAATTTGAGGCGTTCTCAGTTTGTTCAGgtagactgtt ... tctgttgcagGTTTTTAATAACAGTCCTGATGAAACTGCGTATTTTAGGATGATGTTGGAC