1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCGCTTCAACGTCCGCGAGGTTGAGATGGGCACCCGCCGTCCTCTCGTCCTCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgctcagatttctctcctaggatttctccccttgcttctcccaggttgagagtctaataatgaatgtgaactggacaagcagttgtttgatgtggtttgttgtgcgcgcggcgcattgcag
species | Zea mays |
transcript | GRMZM2G063737_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAG GAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATCEST: gi|93284004|gb|EB676268.1|EB676268
genomic: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgc ... cgcattgcagGAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATC
EST: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAG GAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATCEST: gi|74233388|gb|DT641302.1|DT641302
genomic: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgc ... cgcattgcagGAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATC
EST: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAG GAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATC
genomic: TCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgc ... cgcattgcagGAGGAGGATTCCGAGGAGTACGGGAGCCCGATGGTGCTGGCTACTGCCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCTTCAACGTCCGCGAGGTTGAGATGGGCACCCGCCGTCCTCTCGTCCTCCAGATGGTTCACGACCCCACCGCCCTCGAGCCCAGATGCCGATTCCAGgtccgtgtgctcagatttctctcctaggatttctccccttgcttctcccaggttgagagtctaataatgaatgtgaactggacaagcagttgtttgatgtggtttgttgtgcgcgcggcgcattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG