1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTGAACGGAGTCATGCTTGTGAGATTAGGCTTTGTCGTTGTAGCCTCCGTCGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatcttgttctgctctcctttccttaggtttcttctcttcatttgaattcttcattcaagggtccctgttttcag
species | Zea mays |
transcript | GRMZM2G062738_T01 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATEST: gi|211274727|gb|FL132304.1|FL132304
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATGEST: gi|211089185|gb|FL460533.1|FL460533
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATG
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATEST: gi|211274725|gb|FL132302.1|FL132302
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCACGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATEST: gi|32844934|gb|CD984615.1|CD984615
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTACCAATTCTGAACATEST: gi|211274729|gb|FL132306.1|FL132306
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACAT
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATGEST: gi|211274730|gb|FL132307.1|FL132307
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATG
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATGEST: gi|211274726|gb|FL132303.1|FL132303
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATG
EST: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAG ACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATG
genomic: CGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatct ... ctgttttcagACTATGTCCAAGCAAGGAAAAGGAAGGATAAGGCTAACAATTCTGAACATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAACGGAGTCATGCTTGTGAGATTAGGCTTTGTCGTTGTAGCCTCCGTCGCAGCTTTAACTCTTCAGAGAGCTAACAGTGGGGCCAGGCACAGCAAAGgtaccaatcttgttctgctctcctttccttaggtttcttctcttcatttgaattcttcattcaagggtccctgttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG