Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGGCGTTCCGGCTCTCGGCCGCGCCGGGGGCCGGCTTACTGAAGCTGCACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctcttctacgcctccaatctggttccccgctctatcgtttgtgtttgctctcacctgtttcaatatgttcttagccaggggttaatttaaggtgt...

Basic information

species Zea mays
transcript GRMZM2G062425_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062425_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os03g21830.1 (Oryza sativa), 5'ss of exon 1
CGAGGCGTTCCGGCTCTCGGCCGCGCCGGGGGCCGGCTTACTGAAGCTGCACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctcttctacgcctccaatctggttc-cccgctctatcgtttgtgtttgctctcacctgtttcaatatgttcttagccaggggttaatttaa----ggtgt--
|||||||||||| || ||||| |   |||| || |||   || |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||  | ||    | |||   || |||    || ||  ||  | |        ||  ||  |     | |||||   || | ||  |  ||  |    | ||   
CGAGGCGTTCCGTCTGTCGGCGGATGCGGGCGCGGGCGCGCTCAAGCTGCAGAAGGGCGACATCACCCTCTGGTCCGTCGACGGCGCCACCGACGCCATCgtacgtccctccttccttccttccttgttaattcgttccctccctcg-----atccttgccgatgct--tgtgttcccggcgaaggagtggttcgaatctgatgctg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60346456|gb|DN213429.1|DN213429
EST:     CGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: CGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|60350894|gb|DN217867.1|DN217867
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|60400550|gb|DN233357.1|DN233357
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|149058791|gb|EE156812.2|EE156812
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|71760661|gb|DR958598.1|DR958598
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|211491111|gb|FL180880.1|FL180880
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGT
EST: gi|211488222|gb|FL180860.1|FL180860
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTT
EST: gi|76284272|gb|DV023840.1|DV023840
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|71775282|gb|DR973160.1|DR973160
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--
EST: gi|78118087|gb|DV536474.1|DV536474
EST:     ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATC                         GTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGATGGAGCT
genomic: ACAAGGGCGACATCACCCTCTGGTCCGTCGACTGCGCCACCGACGCCATCgtacgctctt ... gttttggcagGTTAATGCTGCTAATGAGCGAATGTTAGGTGGCGGAGGTGTTGAT-G-G--