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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctcttttcttcttttagctcatcttttcgttttagtaatgcggattgactattttgcaatgaagtgttgtatgcaacaatttagtacataactt...

Basic information

species Zea mays
transcript GRMZM2G062373_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062373_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g57450.1 (Oryza sativa), 5'ss of exon 1
GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctcttttcttcttttagctcatcttttcgttttagtaat-gcggattgactatttt---gcaatgaagtgttgtatgcaacaatttagtacataactt
||||||| ||||   || || ||| ||||| | ||||||||| |||||||||| || ||||| |||||||| ||||| ||||| ||||| |||||||||||| ||||  ||| | |   | |  |||     |  |    ||| | || |||| |    |||    | ||||  ||||   || ||  ||||| || | |    
GCTGCAGGTGCCGACGGGGAGGCAGCAGGGCCAACAGATGAGCTGCACACTGTGCCTGAGGATGAACCTGTGTATCATGATGCACCTGATGTGCAGAAAGgtttgcccttttacattgctcaattcaatcgctattaactgtatttgctgatttatcggtttattaccatgagttgttcattgaaatgatttactataga----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19770375|gb|BQ035096.1|BQ035096
EST:     ACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: ACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71313263|gb|DR793159.1|DR793159
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|32938949|gb|CF043768.1|CF043768
EST:     TACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|88746223|gb|DY530364.1|DY530364
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71445986|gb|DR827036.1|DR827036
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|88758151|gb|DY542292.1|DY542292
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71330596|gb|DR802067.1|DR802067
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71444750|gb|DR825800.1|DR825800
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|74233202|gb|DT641116.1|DT641116
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|93283588|gb|EB675852.1|EB675852
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|76012214|gb|DT939384.1|DT939384
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCA
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCA
EST: gi|71428270|gb|DR809320.1|DR809320
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|18176680|gb|BM351613.1|BM351613
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|9953579|gb|BE640162.1|BE640162
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71761895|gb|DR959832.1|DR959832
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|18163425|gb|BM333264.1|BM333264
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|78120264|gb|DV538648.1|DV538648
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|76020045|gb|DT947215.1|DT947215
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|166577166|gb|EG144887.1|EG144887
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATAGGCCGCAAGCAGCTGAAGAACGAAGGAAAACNTGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAAT-GGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGG
EST: gi|88754577|gb|DY538718.1|DY538718
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|17931416|gb|BM268376.1|BM268376
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|18171947|gb|BM347335.1|BM347335
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71325587|gb|DR799482.1|DR799482
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|32918471|gb|CF023283.1|CF023283
EST:     GGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: GGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|76283509|gb|DV023077.1|DV023077
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|60346471|gb|DN213444.1|DN213444
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|60350219|gb|DN217192.1|DN217192
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71299652|gb|DR785834.1|DR785834
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|71326807|gb|DR800070.1|DR800070
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|211107011|gb|FL459245.1|FL459245
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|211237923|gb|FL362196.1|FL362196
EST:     CGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: CGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|211151163|gb|FL467098.1|FL467098
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|101388791|gb|EB816379.1|EB816379
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|76285514|gb|DV025082.1|DV025082
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|101384101|gb|EB814105.1|EB814105
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|5069896|gb|AI737861.1|AI737861
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|149042732|gb|EE047248.2|EE047248
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|76283110|gb|DV022678.1|DV022678
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
EST: gi|20513067|gb|BQ280253.1|BQ280253
EST:     TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAG                         AAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG
genomic: TGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 469

GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGGCCTGTAGTGACTAGTGAGGCGATTCTGTGTATCTGAAAGATGGGACTGG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGGCCTGTAGTGACTAGTGAGGCGATTCTGTGTATCTGAAAGATGGGACTGG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 274

GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGGCCTGTAGTGACTAGTGAGGCGATTCTGTGTATCTGAAAGATGGGACTGG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 228

GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctct ... gtggatgcagAAAACTGAGGCAATGGCCGCAAGCAGCTGAAGAACGAAGGAAAACATGGGGCCTGTAGTGACTAGTGAGGCGATTCTGTGTATCTGAAAGATGGGACTGG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGCAGATGCCAGTGGAGATGCATCAGGGGCGACAGATGAGTTGCACACTGTACCAGAGGACGAACCTGTTTATCACGATGCGCCTGAGGTGCAGAAAGgtctgcctcttttcttcttttagctcatcttttcgttttagtaatgcggattgactattttgcaatgaagtgttgtatgcaacaatttagtacataactt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA