Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctctctctctctatcccacctctctctctgcgacctctatctgttcgtggaaccgagtcgtcctcgctgcatggactctcttacctgtccaga...

Basic information

species Zea mays
transcript GRMZM2G062076_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G062076_T02 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 5'ss of exon 1
CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctctctctctctatcccacctctctctctgcgacctc-tatctgttcgtggaaccgagtcgt-cctcgctgcatggactctcttacctgtccaga
||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||| || | ||||  |  ||| |    ||  | |||     | | |     ||     |  ||||  |  |  |    |  ||   ||    ||    
CGGCCAAGGGCGGCAACGAGCAGGGCGGCACCCGCATCTTCGGGCCCTCGCAGAAGTACTCCTCCCGCGACCTCGCCGCCCACACCACCCTCAAGCCCAGgtactctttccccctcttcaatccatccacatcaattcgattcgatttttagctatgtgcgtgcttcgtgtcgtggagatctggatcggatattcttctg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348926|gb|DN215899.1|DN215899
EST:     CGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|22542576|gb|BU093014.1|BU093014
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|9731495|gb|BE510247.1|BE510247
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211094642|gb|FL030914.1|FL030914
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|149074288|gb|EE162665.2|EE162665
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|14203855|gb|BG837532.1|BG837532
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079010|gb|FL148949.1|FL148949
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|28987594|gb|CB351712.1|CB351712
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGG-CAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|27522103|gb|CA989209.1|CA989209
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|19770098|gb|BQ034819.1|BQ034819
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|22546523|gb|BU098834.1|BU098834
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|60357589|gb|DN224562.1|DN224562
EST:     CTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211094641|gb|FL030913.1|FL030913
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|71318075|gb|DR795799.1|DR795799
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211094644|gb|FL030916.1|FL030916
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|94479969|gb|EB708927.1|EB708927
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|60357962|gb|DN224935.1|DN224935
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079009|gb|FL148948.1|FL148948
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|67015842|gb|CO444591.1|CO444591
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079019|gb|FL148958.1|FL148958
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGATAGAGGAATCTCAG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGA-AGAGGAATCTCAG
EST: gi|40334927|gb|CK368997.1|CK368997
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|28910213|gb|CB331325.1|CB331325
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211540431|gb|FL210072.1|FL210072
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|19822434|gb|BQ048458.1|BQ048458
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGTGGTGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079007|gb|FL148946.1|FL148946
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|8367292|gb|BE050237.1|BE050237
EST:     CAGAAGTTCTGCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|37393026|gb|CF633769.1|CF633769
EST:     CCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|28568978|gb|CB280853.1|CB280853
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         A-AAA-GACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|22520729|gb|BU079540.1|BU079540
EST:     CGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|9794824|gb|BE553132.1|BE553132
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|9742832|gb|BE518980.1|BE518980
EST:     CAGAAG-TCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|148958811|gb|EE010417.2|EE010417
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|40334706|gb|CK368776.1|CK368776
EST:     GACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: GACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|28569026|gb|CB280901.1|CB280901
EST:     AGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAAGCCAAG                         A-AAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAG
genomic: AGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTC-AAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAG
EST: gi|211540429|gb|FL210070.1|FL210070
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         ABAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211540435|gb|FL210076.1|FL210076
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211081741|gb|FL148961.1|FL148961
EST:     CAGAAGTTCTCMTCCCGCGWCCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079013|gb|FL148952.1|FL148952
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAG                         A-AAA-GACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079006|gb|FL148945.1|FL148945
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211540434|gb|FL210075.1|FL210075
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|148965262|gb|EC906100.2|EC906100
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211076273|gb|FL148942.1|FL148942
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211079014|gb|FL148953.1|FL148953
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211276946|gb|FL388217.1|FL388217
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|211076275|gb|FL148944.1|FL148944
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|26457681|gb|CA829264.1|CA829264
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|76015323|gb|DT942493.1|DT942493
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
EST: gi|9794685|gb|BE552993.1|BE552993
EST:     CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCC-A-                         AGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG
genomic: CAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctc ... ccacgtgtacAGAAAAGACGGTCAACAGACCCAAGAGGAGTTACAGAAGAGGAATCTCAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCCAAGGGCGGCAACGAGCAGGGGGGCACCCGCATCTTCGGCCCCTCCCAGAAGTTCTCCTCCCGCGACCTCGCCGCGCACACCTCCCTCAAGCCAAGgtactctctctctctctctatcccacctctctctctgcgacctctatctgttcgtggaaccgagtcgtcctcgctgcatggactctcttacctgtccaga

- - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctctctc