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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGAGCCACCGATCGCTCCTCTCCACTTTCCACATTCCAGTTCCACTCCGCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatccgatcccaaacagtttcaggcgactgcgccaccccaacgctcctagggggacttcttccagtgagatccatggctgccgatcttagattgg...

Basic information

species Zea mays
transcript GRMZM2G061928_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211407096|gb|FL112927.1|FL112927
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402002|gb|FL112896.1|FL112896
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270185|gb|FL112868.1|FL112868
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|31356747|gb|CD441104.1|CD441104
EST:     ACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: ACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|31355864|gb|CD440221.1|CD440221
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|13237104|gb|BG355118.1|BG355118
EST:     ACTCCGAAACTCCGACAGTCCGACCACAAG                         GGCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: ACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402006|gb|FL112900.1|FL112900
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402013|gb|FL112907.1|FL112907
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404548|gb|FL112915.1|FL112915
EST:     GCTTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270192|gb|FL112875.1|FL112875
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270189|gb|FL112872.1|FL112872
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         YT-TTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402014|gb|FL112908.1|FL112908
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404549|gb|FL112916.1|FL112916
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402003|gb|FL112897.1|FL112897
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         G-YTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404557|gb|FL112924.1|FL112924
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270184|gb|FL112867.1|FL112867
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211407095|gb|FL112926.1|FL112926
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402012|gb|FL112906.1|FL112906
EST:     GCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404550|gb|FL112917.1|FL112917
EST:     GGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|1531734|gb|AA051884.1|AA051884
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402010|gb|FL112904.1|FL112904
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTTCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|7216723|gb|AW562845.1|AW562845
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270194|gb|FL112877.1|FL112877
EST:     GCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399469|gb|FL112895.1|FL112895
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         YT-TTGTTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGC
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTG-TGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGC
EST: gi|211402016|gb|FL112910.1|FL112910
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGCAAGGATGAGTGAAGAGGATAAGACTGCTGC
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAG-AAGGATGAGTGAAGAGGATAAGACTGCTGC
EST: gi|211402015|gb|FL112909.1|FL112909
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399460|gb|FL112886.1|FL112886
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         YT-TTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|5846897|gb|AI999980.1|AI999980
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211407098|gb|FL112929.1|FL112929
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTTAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404554|gb|FL112921.1|FL112921
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404546|gb|FL112913.1|FL112913
EST:     CCTCCGTYTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: CCTCCG-CTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211402011|gb|FL112905.1|FL112905
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|31353516|gb|CD437873.1|CD437873
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404552|gb|FL112919.1|FL112919
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         G-YTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399457|gb|FL112883.1|FL112883
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404547|gb|FL112914.1|FL112914
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         G-YTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399465|gb|FL112891.1|FL112891
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|5325087|gb|AI783278.1|AI783278
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399468|gb|FL112894.1|FL112894
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|32851386|gb|CD991067.1|CD991067
EST:     GCCTCCGCTGCCGGTCGCCG-CTCCG-AACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270190|gb|FL112873.1|FL112873
EST:     GCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211267755|gb|FL112864.1|FL112864
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211267756|gb|FL112865.1|FL112865
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|60351510|gb|DN218483.1|DN218483
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270187|gb|FL112870.1|FL112870
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         GTCTTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGC
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTC-TTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGC
EST: gi|211399467|gb|FL112893.1|FL112893
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         YT-TTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399455|gb|FL112881.1|FL112881
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211407097|gb|FL112928.1|FL112928
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         G-YTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270193|gb|FL112876.1|FL112876
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399459|gb|FL112885.1|FL112885
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         GTYTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|13237307|gb|BG355321.1|BG355321
EST:     GCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|31355702|gb|CD440059.1|CD440059
EST:     CCTCCGCTGCCGGTCGCCGCTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: CCTCCGCTGCCGGTCGCCG-ACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|78104562|gb|DV522980.1|DV522980
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|31349512|gb|CD433869.1|CD433869
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404553|gb|FL112920.1|FL112920
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         YT-TTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|32919374|gb|CF024186.1|CF024186
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|33090854|gb|CF050848.1|CF050848
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399456|gb|FL112882.1|FL112882
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211404558|gb|FL112925.1|FL112925
EST:     GCCTCCGCTGCCGGTCGCCGACTCCNAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270186|gb|FL112869.1|FL112869
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399461|gb|FL112887.1|FL112887
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211399464|gb|FL112890.1|FL112890
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAA-                         G-YTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270197|gb|FL112880.1|FL112880
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|33770718|gb|CF273012.1|CF273012
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|7304728|gb|AW600667.1|AW600667
EST:     GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
EST: gi|211270195|gb|FL112878.1|FL112878
EST:     GCCTCCGCTGCCGGTCGCCGTCTCCGAGACTCCGACAGTCCGACCGCAAG                         GTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT
genomic: GCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 290

GCAGAGCCACCGATCGCTCCTCTCCACTTTCCACATTCCAGTTCCACTCCGCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 396

GCAGAGCCACCGATCGCTCCTCTCCACTTTCCACATTCCAGTTCCACTCCGCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCT


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 311

GCAGAGCCACCGATCGCTCCTCTCCACTTTCCACATTCCAGTTCCACTCCGCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 429

GCAGAGCCACCGATCGCTCCTCTCCACTTTCCACATTCCAGTTCCACTCCGCCTCCGCTGCCGGTCGCCGACTCCGAAACTCCGACAGTCCGACCACAAGgtgaggatcc ... aataatgtagGTCTTGTGCGGGATCCACAGAAGGATGAGTGAAGAGGATAAGACTGCTGCTTCTGCTGAGCAGCCGAAGAGGGCCCCTAAGCTCAATGAAAGGATCCTCT