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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTGATGGTATATTTTTCTACAATTGCAACAGTGCTGCTGTGTTTCATAATGCAAGCACACGATTCTCTGACGGGGCTCGTTTTGGATTGGGTGCTGAGgtaggtcctatctttttatatggcatttgagtgaactctttggaaaagaatgtcttggcataagttacttttttttatcttttctcatgattgtttaccgttatcttcatatttctacctttgaaatatcttaaatag

Basic information

species Zea mays
transcript GRMZM2G061777_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G061777_T04 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os05g38150.1 (Oryza sativa), 5'ss of exon 17
CACTGATGGTATATTTTTCTACAATTGCAACAGTGCTGCTGTGTTTCATAATGCAAGCACACGATTCTCTGACGGGGCTCGTTTTGGATTGGGTGCTGAGgtaggtcctatctttttatatggcatttgagtgaactctttggaaaa-gaatgtcttggcataagttacttttttttatcttttctcatgattgtttaccgttatcttcatatttctacctttgaaatatcttaaatag
                                 ||||||||| |||||||||||||| ||  |||||||||| ||||||||||||||||||||||||||||||  ||  ||   |||| ||| |||||   |    |  ||       |||  | |||| |||  ||   |                                                                    
---------------------------------TGCTGCTGTATTTCATAATGCAAGTACGAGATTCTCTGATGGGGCTCGTTTTGGATTGGGTGCTGAGgtacttcaaat---tttacatgccatttacctttctttcttaattgctgaacttattggaatatcttgaatag------------------------------------------------------------------

upper sequence: GRMZM2G061777_T04 (Zea mays), 5'ss of exon 1
lower sequence: Vv13s0019g02360.t01 (Vitis vinifera), 5'ss of exon 18
CACTGATGGTATATTTTTCTACAATTGCAACAGTGCTGCTGTGTTTCATAATGCAAGCACACGATTCTCTGACGGGGCTCGTTTTGGATTGGGTGCTGAGgtaggtcctatctttttatatggcatttgagtgaactctttggaaaagaatgtcttggcataagttacttttttttatcttttctcatgattgtttaccgttatcttcatatttctacctttgaaatatcttaaatag
                                 ||||||||| ||||| ||||| |||||| |||| | ||| ||||||||||||||| | || || |||||| ||   |  ||   |  |   ||| ||    | ||  ||     ||    |||  |     |   |||  ||| ||||    |   || |                                             
---------------------------------TGCTGCTGTCTTTCACAATGCTAGCACAAGATTTTGTGATGGGGCTCGTTTTGGACTTGGGGCCGAGgtatgtttcaa-ttaccacgtt-tattggacattaatccatgtggttgaggtccttacccctgatggttttcatttttcttaatgctgaatag---------------------------------------------